Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: algorithm ✕ Assay: nanopore ✕ Clear

Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate.

PMID 41758556 · PMC12948150 · Microbial genomics · 2026 · 8 claims · 8 setups

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Autocycler (consensus long-read-only assembler) circularised the most chromosomes, 95% (87/92), significantly more than Unicycler, Unicycler bold, Flye and Hybracter (hybrid)

clinical enterobacterales assembled assembler-polisher nanopore illumina comparative
Diversity and evolution of a phase-variable multi-locus antigen in Neisseria gonorrhoeae.

PMID 42113870 · PMC13183285 · PLoS pathogens · 2026 · 8 claims · 8 setups

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Each N. gonorrhoeae genome has on average 7 distinct opa alleles at 9-12 opa loci

gonorrhoeae complete opa non-gonorrhoeae long-read custom blast
Full-length 16S rRNA nanopore sequencing enables species resolution of Fusobacterium associated with colorectal cancer.

PMID 41963777 · PMC13078227 · Gut microbes · 2026 · 8 claims · 7 setups

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Full-length 16S rRNA ONT sequencing combined with custom demultiplexing (nanoMux) enables robust species-level discrimination within the Fusobacterium genus

gtdb rrndb zymobiomics host-bacteria ani phylogenetic 16s
Manual validation finds ultra-long-read sequencing best enables faithful, population-level structural variant calling in Drosophila melanogaster euchromatin with nanopore.

PMID 41806374 · PMC13148403 · G3 (Bethesda, Md.) · 2026 · 8 claims · 5 setups

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Only ultra-long long-reads (N50 > 50 kb) are capable of accurately calling structural variants of any size in D. melanogaster euchromatin

inbred downsampled aligned putative ont illumina novo

Experiments

Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate.

Diversity and evolution of a phase-variable multi-locus antigen in Neisseria gonorrhoeae.

Full-length 16S rRNA nanopore sequencing enables species resolution of Fusobacterium associated with colorectal cancer.

Manual validation finds ultra-long-read sequencing best enables faithful, population-level structural variant calling in Drosophila melanogaster euchromatin with nanopore.