Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• The Nuclear and Mitochondrial Genomes of the Lined Rockskipper, Istiblennius lineatus (Teleostei: Blenniidae).

  PMID 42117780 · PMC13195801 · Genome biology and evolution · 2026 · 7 claims · 8 setups

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  A chromosome-scale nuclear genome assembly of I. lineatus (643.23 Mb, 24 pseudochromosomes) was generated using PacBio HiFi reads and Arima Hi-C scaffolding.

  istiblennius lineatus pacbio hi-c rna-seq

• Whole genomes reveal subpopulations and isolation-by-distance patterns in the Norwegian lemming.

  PMID 41787358 · PMC13064042 · BMC biology · 2026 · 8 claims · 8 setups

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  The Norwegian lemming population is geographically structured into distinct subpopulations showing an isolation-by-distance pattern, contrary to earlier microsatellite-based findings of weak structure

  lemmus single norwegian lemmings whole-genome novo principal

• Organelle Genomes and Transcriptomes of Nymphaea Reveal the Interplay between Intron Splicing and RNA Editing.

  PMID 34576004 · PMC8466565 · International journal of molecular sciences · 2021 · 8 claims · 8 setups

  Has reproduction · 76

  Both cis- and trans-splicing group II introns in Nymphaea organelle genomes are spliced in random order, generating diverse co-existing intermediates rather than following a fixed splicing sequence.

  nymphaea joey liriodendron pacbio illumina strand-specific

• Visualization of shared genomic regions and meiotic recombination in high-density SNP data.

  PMID 19696932 · PMC2725774 · PloS one · 2009 · 8 claims · 7 setups

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  SNPduo is a command-line (SNPduo++) and web-accessible tool that analyzes and visualizes relatedness between two individuals using identity by state (IBS) from SNP genotypes.

  trio family siblings synthetic snp synthetic mitochondrial

• pmid-41123565

  PMID 41123565 · PMC12774602 · 8 claims · 7 setups

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  Produced the first chromosome-level genome assembly of P. americana, scaffolded into 17 chromosome-scale scaffolds consistent with karyotype

  leg midgut assembled blattodea pacbio hi-c bulk

• pmid-41248690

  PMID 41248690 · PMC12869079 · 6 claims · 7 setups

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  This is the first high-quality chromosome-level reference genome for R. duospilus

  duospilus pacbio hi-c rna-seq

• The genome sequence of the Portuguese Dappled White, Euchloe tagis (Hübner, 1804) (Lepidoptera: Pieridae).

  PMID 42028159 · PMC13100615 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A chromosome-level genome assembly was generated for Euchloe tagis (Portuguese Dappled White) as part of Project Psyche

  euchloe pacbio hi-c k-mer

• The genome sequence of the Southern White Admiral, Limenitis reducta (Staudinger, 1901) (Lepidoptera: Nymphalidae).

  PMID 42078575 · PMC13129534 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A chromosome-level genome assembly was generated for a female Limenitis reducta specimen, comprising two phased haplotypes.

  reducta pacbio assembled haplotype pacbio hi-c k-mer

• The genome sequence of Geoffroy's Bat, Myotis emarginatus (Geoffroy, 1806) (Chiroptera: Vespertilionidae).

  PMID 42238844 · PMC13227098 · Wellcome open research · 2026 · 8 claims · 7 setups

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  A chromosome-level genome assembly was generated for Myotis emarginatus (Geoffroy's Bat) as part of the Darwin Tree of Life Project

  myotis pacbio hi-c rna-seq

• The Chromosome-Scale Genome Assembly of the Redlip Blenny, Ophioblennius macclurei (Blenniidae).

  PMID 41378738 · PMC12758960 · Genome biology and evolution · 2026 · 8 claims · 12 setups

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  A chromosome-scale genome assembly of O. macclurei was generated (529.6 Mb, scaffold N50 23.7 Mb, GC 43.49%) using ONT long reads, Illumina short reads, and Hi-C scaffolding.

  blood muscle tissues assembled oxford illumina hi-c

• The genome sequence of the Eastern Pale Clouded Yellow, Colias erate (Esper, 1805) (Lepidoptera: Pieridae).

  PMID 41960581 · PMC13058573 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was produced for Colias erate (Eastern Pale Clouded Yellow) as part of Project Psyche.

  colias hmw pacbio hi-c

• The genome sequence of the Northern Grizzled Skipper, Pyrgus centaureae (Rambur, 1839) (Lepidoptera: Hesperiidae).

  PMID 42038589 · PMC13109703 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was produced for Pyrgus centaureae (Northern Grizzled Skipper) as part of Project Psyche.

  pyrgus pacbio hi-c rna-seq