Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.
PMID 17712414 · PMC1942082 · PloS one · 2007 · 8 claims · 5 setups
P-POD is the first comparative genomics database to combine results from multiple computational ortholog/homolog prediction methods with manually curated literature-derived experimental evidence of functional conservation.
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Non-EST based prediction of exon skipping and intron retention events using Pfam information.
PMID 16204458 · PMC1243800 · Nucleic acids research · 2005 · 7 claims · 5 setups
A novel ab initio method predicts exon skipping and intron retention events using only Pfam domain annotation, via a Viterbi-like dynamic programming algorithm applied to the Pfam alignment.
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ARED Organism: expansion of ARED reveals AU-rich element cluster variations between human and mouse.
PMID 17984078 · PMC2238997 · Nucleic acids research · 2008 · 6 claims · 4 setups
ARED Organism and ARED-Integrated are new/updated public databases cataloguing ARE-containing mRNAs/genes in human, mouse and rat
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Evolution of a distinct chromatin regulatory landscape in brown algae.
PMID 41896322 · PMC13076208 · Nature ecology & evolution · 2026 · 8 claims · 6 setups
Brown algae lost DNA methyltransferases (DNMT1, DNMT3, DNMT5) early in their evolution, retaining only DNMT2/TRDMT homologues