Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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FEDRANN: effective long-read overlap detection based on dimensionality reduction and approximate nearest neighbors.
PMID 42102720 · PMC13201080 · GigaScience · 2026 · 8 claims · 6 setups
A pipeline combining IDF transformation, sparse random projection (SRP), and NNDescent (the FEDRANN strategy) enables accurate overlap detection across diverse long-read datasets
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Has reproduction · 80
SLDMS: A Tool for Calculating the Overlapping Regions of Sequences.
PMID 35046988 · PMC8761809 · Frontiers in plant science · 2021 · 8 claims · 5 setups
SLDMS is a novel method for computing overlapping regions of sequencing reads using suffix array (SA), longest common prefix (LCP) array, document array (DA), and a monotonic stack.
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Accessing medically relevant complex regions with a pangenome graph of 20 near-complete Japanese haplotypes.
PMID 42203797 · PMC13216315 · Nature communications · 2026 · 8 claims · 8 setups
Generated 20 near-complete haplotypes from 10 Japanese male individuals using PacBio HiFi, ONT ultra-long, and Omni-C reads, all with contig N50 exceeding 100 Mbp
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Whole-genome sequencing with AVITI and NovaSeq X Plus reveals comparable performance with contextual biases.
PMID 42206012 · PMC13202175 · NAR genomics and bioinformatics · 2026 · 8 claims · 7 setups
AVITI and NovaSeq X Plus are highly comparable overall for variant-calling performance in WGS