Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Aggregation propensity of the human proteome.
PMID 18927604 · PMC2557143 · PLoS computational biology · 2008 · 8 claims · 7 setups
Long proteins have, on average, less intense/pronounced aggregation peaks than short proteins
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Has reproduction · 92
An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation.
PMID 34772928 · PMC8590018 · Nature communications · 2021 · 8 claims · 5 setups
PISA-Express is a method that simultaneously measures protein expression and thermal stability (solubility) changes using only two samples per replicate per cell type
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A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics.
PMID 18957120 · PMC2628390 · BMC bioinformatics · 2008 · 8 claims · 2 setups
Sili2DGel represents recursive gel matching results as a weighted undirected graph and identifies SAP by finding cliques and pseudocliques (dense subgraphs) after edge-weight filtering, strength-metric-based graph reduction, and cluster refinement.
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DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization.
PMID 14519203 · PMC328457 · Genome biology · 2003 · 7 claims · 5 setups
DiagHunter identifies large-scale synteny blocks within or between genomes efficiently despite background noise and genomic discontinuities, without performing sequence alignment