Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins.

  PMID 35301123 · PMC9189052 · Metabolic engineering · 2022 · 8 claims · 7 setups

  Has reproduction · 71

  Swapping expression host from CHO to HEK293 improves secreted titers for roughly one third of difficult-to-express human proteins

  expicho choebnalt85-1e9 freestyle culture transient semi-stable targeted

• PRIDE: a public repository of protein and peptide identifications for the proteomics community.

  PMID 16381953 · PMC1347500 · Nucleic acids research · 2006 · 8 claims · 6 setups

  Full-text index only

  PRIDE is a PSI-compliant public repository for protein and peptide identifications, associated post-translational modifications, and supporting mass spectra from the scientific literature.

  plasma platelet jurkat specified peptide peptide-centric mass

• The Proteomics Identifications database: 2010 update.

  PMID 19906717 · PMC2808904 · Nucleic acids research · 2010 · 8 claims · 6 setups

  Full-text index only

  PRIDE has become one of the main repositories for MS-based proteomics data, with substantial growth in data holdings over the last two years.

  species plasma caenorhabditis secretory ms-based quantitative

• Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?

  PMID 15287975 · PMC507878 · Genome biology · 2004 · 8 claims · 6 setups

  Full-text index only

  3,848 Arabidopsis proteins were identified as likely plant-specific based on phylogenetic profiling and EST confirmation in multiple plant species

  arabidopsis phylogenetic tblastn subcellular

• Molecular subtype of recurrent implantation failure reveals distinct endometrial etiology of female infertility.

  PMID 40660214 · PMC12257665 · Journal of translational medicine · 2025 · 8 claims · 8 setups

  Has reproduction · 68

  RIF endometrial samples segregate into two reproducible molecular subtypes: an immune-driven subtype (RIF-I) and a metabolic-driven subtype (RIF-M)

  endometrial in-house bulk rif-degs meta-analysis sequencing immune