Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry.
PMID 17166507 · PMC7094463 · Journal of chromatography. A · 2007 · 8 claims · 8 setups
Standardizing sample preparation procedures for serum/plasma profiling is critical for obtaining reliable biomarkers, since slight procedural changes can produce very different protein profiles.
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Boosting the detection of enhancer-promoter loops via normalization methods for chromatin interaction data.
PMID 41633996 · PMC12976324 · Nature communications · 2026 · 8 claims · 8 setups
ICE and KR matrix balancing normalization methods over-correct and attenuate low-frequency enhancer-promoter loop signals despite preserving structural (CTCF-mediated) loops
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CLAMP: predicting specific protein-mediated chromatin loops in diverse species with a chromatin accessibility language model.
PMID 41555433 · PMC12903630 · Genome biology · 2026 · 8 claims · 8 setups
CLAMP, a chromatin-accessibility language model, predicts protein-mediated chromatin loops across 10 species, 18 proteins, and 24 cell types with superior performance versus existing methods.
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Identification of cis-regulatory elements provides insights into tissue-specific gene regulation in the sheep genome.
PMID 41839849 · PMC12992920 · Nature communications · 2026 · 8 claims · 8 setups
274,682 enhancers and 25,975 promoters were characterized across 24 tissues from an adult female sheep using ChIP-seq, ATAC-seq, CAGE-seq, RRBS, WGBS, and RNA-seq.