Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: proteome ✕ Assay: phylogenomics ✕ Clear

Expansion of the human mitochondrial proteome by intra- and inter-compartmental protein duplication.

PMID 19930686 · PMC3091328 · Genome biology · 2009 · 8 claims · 6 setups

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The human mitochondrial proteome expanded via two prevailing gene duplication modes: intra-mitochondrial and inter-compartmental duplication

cerevisiae mitocarta mitochondrial tissues comparative subcellular gene
From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism.

PMID 17983265 · PMC2062474 · PLoS computational biology · 2007 · 8 claims · 7 setups

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There has been a large turnover of the mitochondrial proteome during evolution: cell envelope synthesis proteins virtually disappeared, and replication, transcription, cell division, transport, regulation, and signal transduction proteins were replaced by eukaryotic proteins

alpha-proteobacterial reclinomonas reconstructed yeast comparative phylogenomic cog
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics.

PMID 37036103 · PMC10084500 · GigaScience · 2022 · 8 claims · 8 setups

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GEN-ERA is a unified, publicly available toolbox of 13 Nextflow workflows supported by 14 Singularity containers for reproducible microbial genomic/phylogenomic analyses in both bacteria and small eukaryotes.

gloeobacterales gloeobacteraceae publicly ncbi-deposited phylogenomics ssu genome
Genome of the endangered Guatemalan Beaded Lizard, Heloderma charlesbogerti, reveals evolutionary relationships of squamates and declines in effective population sizes.

PMID 36226801 · PMC9713440 · G3 (Bethesda, Md.) · 2022 · 8 claims · 7 setups

Has reproduction · 84

The assembled draft genome of H. charlesbogerti totals 2.31 Gb, similar in size to related species

blood charlesbogerti reptile annotated whole-genome novo repeat

Experiments

Expansion of the human mitochondrial proteome by intra- and inter-compartmental protein duplication.

From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism.

The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics.

Genome of the endangered Guatemalan Beaded Lizard, Heloderma charlesbogerti, reveals evolutionary relationships of squamates and declines in effective population sizes.