Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases.

  PMID 19091018 · PMC2638159 · BMC bioinformatics · 2008 · 6 claims · 5 setups

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  Existing SNP/disease databases are fragmented; no combined resource widely supports gene-, SNP-, and disease-related information together

  private disease uniprot snps database controlled sequence

• Integrating herbarium specimen observations into global phenology data systems.

  PMID 30937223 · PMC6426164 · Applications in plant sciences · 2019 · 7 claims · 5 setups

  Has reproduction · 60

  The Plant Phenology Ontology (PPO) can be extended with a new class 'portion of a plant' and new object properties ('is or was part of', 'generated from', 'quality datum of') to logically relate observations of plant parts (as in herbarium specimens) to whole-plant phenological traits.

  prunus integrated serotina plant first-order linear ontology

• Toward a Consensus in the Repertoire of Hemocytes Identified in Drosophila.

  PMID 33748138 · PMC7969988 · Frontiers in cell and developmental biology · 2021 · 8 claims · 8 setups

  Has reproduction · 74

  Comparative analysis of three scRNAseq studies identifies eight common, robust hemocyte subgroups associated with distinct functions (proliferation, immune response, phagocytosis, secretion)

  wandering feeding stage type single scenic immunolabeling

• Functional analysis of novel SNPs and mutations in human and mouse genomes.

  PMID 19091009 · PMC2638150 · BMC bioinformatics · 2008 · 8 claims · 7 setups

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  FANS streamlines functional analysis of novel SNPs and mutations into a simplified, few-click, four-step procedure.

  apoe 11-nucleotide sequence genomic manual automated exonic

• Spatial cartography of human thymus enables the geopositioning of lineage transcription factors in rare mimetic thymic epithelial cells.

  PMID 41807357 · PMC13102919 · Nature communications · 2026 · 7 claims · 7 setups

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  Generated a high-resolution spatial transcriptomic atlas of human fetal (13,14,17,18w) and paediatric (7w,2y,5y,6y) thymi using Stereo-seq, integrated with scRNA-seq and MACSima/Stereo-CITE proteomics

  fetal paediatric thymus stereo-seq scrna-seq macsima

• Performance of methods to detect genetic variants from bisulphite sequencing data in a non-model species.

  PMID 34435438 · PMC9290141 · Molecular ecology resources · 2022 · 6 claims · 6 setups

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  Bisulphite conversion of unmethylated cytosines to thymines violates strand-complementarity assumptions of SNP callers and confounds true C->T SNPs with unmethylated cytosines, complicating SNP calling from bisulphite sequencing data.

  blood bismark-aligned bwa-mem-based gem3-based whole-genome snp