Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Direct inference of SNP heterozygosity rates and resolution of LOH detection.
PMID 18052545 · PMC2098867 · PLoS computational biology · 2007 · 6 claims · 7 setups
A large proportion of SNPs in dbSNP have high-variance HET rate estimates, limiting their reliability for LOH study design.
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Discordance of species trees with their most likely gene trees.
PMID 16733550 · PMC1464820 · PLoS genetics · 2006 · 7 claims · 2 setups
For any species tree topology with n ≥ 5 taxa, there exist branch lengths for which the most likely gene tree topology (an 'anomalous gene tree') differs from the species tree topology.
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Genomic variability within an organism exposes its cell lineage tree.
PMID 16261192 · PMC1274291 · PLoS computational biology · 2005 · 8 claims · 5 setups
Somatic mutations accumulated during normal development implicitly encode an organism's entire cell lineage tree with very high precision.
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Quantitative analysis of single nucleotide polymorphisms within copy number variation.
PMID 19093001 · PMC2600609 · PloS one · 2008 · 8 claims · 2 setups
Copy number variation is a major factor in HWE violation for SNPs with small minor allele frequency, large sample size, and 0-1% genotyping error rate
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Deducing topology of protein-protein interaction networks from experimentally measured sub-networks.
PMID 18598366 · PMC2474618 · BMC bioinformatics · 2008 · 7 claims · 6 setups
Experimentally measured protein-protein interaction sub-networks are not random samples of their parent networks.