Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 17

System / cell line: pacbio ✕ Assay: profiling ✕ Clear

Standardizing vaginal microbial profiling: evaluating swab materials, storage conditions, and host DNA depletion strategies.

PMID 41491791 · PMC12771794 · BMC microbiology · 2026 · 6 claims · 6 setups

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Swab material (Core Swab A, Core Swab B, Pap Brush) causes minimal variation in bacterial composition, DNA yield, and host DNA contamination.

vaginal artificial clinical 16s pacbio extraction host
The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet & Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences.

PMID 41835092 · PMC12988363 · Wellcome open research · 2026 · 7 claims · 7 setups

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A chromosome-level genome assembly of Lycopodina hypogea was generated, with total length 235.10 Mb and 98.85% of sequence scaffolded into 15 chromosomal pseudomolecules.

lycopodina microbial hypogea pacbio hi-c rna-seq
Chemically guided single-cell transcriptomics reveals sulfotransferase-mediated scaffold remodeling in securinine biosynthesis.

PMID 41577683 · PMC12929733 · Nature communications · 2026 · 8 claims · 8 setups

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FsMS is a ketoreductase that reduces premenisdaurilide to menisdaurilide

suffruticosa synthetic nicotiana pacbio single-cell d2o
A haplotype-resolved genome assembly of the bocaccio rockfish, Sebastes paucispinis.

PMID 40323688 · PMC12584591 · The Journal of heredity · 2025 · 6 claims · 8 setups

Has reproduction · 99

This paper presents the first de novo, haplotype-resolved reference-quality genome assembly of Sebastes paucispinis (bocaccio rockfish).

sebastes assembled pacbio omni-c k-mer
The genome sequence of the fin whale, Balaenoptera physalus (Linnaeus, 1758) (Artiodactyla: Balaenopteridae).

PMID 41657664 · PMC12877476 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was produced for Balaenoptera physalus (fin whale) from a male specimen collected in Orkney, Scotland, as part of the Darwin Tree of Life project

balaenoptera pacbio hi-c k-mer
The genome sequence of the Spanish Fritillary, Euphydryas desfontainii (Godart, 1819) (Lepidoptera: Nymphalidae).

PMID 41835093 · PMC12988360 · Wellcome open research · 2026 · 7 claims · 8 setups

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A chromosome-level genome assembly was produced for Euphydryas desfontainii from a single male specimen, comprising two haplotypes of 755.68 Mb and 751.57 Mb

organism euphydryas pacbio hi-c k-mer
The genome sequence of the Carline Skipper, Pyrgus carlinae (Rambur, 1839) (Lepidoptera: Hesperiidae).

PMID 41841042 · PMC12989058 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was generated for a female Pyrgus carlinae specimen (ilPyrCarl1) as part of Project Psyche

pyrgus pacbio hi-c k-mer
The genome sequence of the Eastern Rock Grayling, Hipparchia syriaca (Staudinger, 1871) (Lepidoptera: Nymphalidae).

PMID 41913757 · PMC13033134 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was generated for Hipparchia syriaca (Eastern Rock Grayling) from a female specimen collected in Măcin, Romania

organism pacbio assembled pacbio hi-c k-mer
The chromosomal genome sequence of the buttercup lucine, Anodontia alba Link, 1807 (Lucinida: Lucinidae) and its associated microbial metagenome sequences.

PMID 41913758 · PMC13033139 · Wellcome open research · 2026 · 6 claims · 7 setups

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Genome assembly of Anodontia alba (buttercup lucine) with total length 1,862.85 Mb, 99.28% scaffolded into 18 chromosomal pseudomolecules

anodontia microbial pacbio hi-c sequencing
The genome sequence of Schreibers's Long-fingered Bat, Miniopterus schreibersii (Kuhl, 1817) (Chiroptera: Miniopteridae).

PMID 42180417 · PMC13197751 · Wellcome open research · 2026 · 8 claims · 7 setups

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A chromosome-level genome assembly was produced for Miniopterus schreibersii from a single male individual, comprising two phased haplotypes.

miniopterus assembled pacbio hi-c rna-seq
The genome sequence of a muscid fly, Phaonia angelicae (Scopoli, 1763) (Diptera: Muscidae).

PMID 42255360 · PMC13234548 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was generated for Phaonia angelicae, a muscid fly, as part of the Darwin Tree of Life project.

phaonia pacbio hi-c k-mer
Highly contiguous chromosome-level assembly of the rock goby (Gobius paganellus) genome.

PMID 41611730 · PMC12957465 · Scientific data · 2026 · 8 claims · 8 setups

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Chromosome-level genome assembly of Gobius paganellus spans 813 Mb with >99.9% of sequence anchored to 23 pseudochromosomes

liver eight pacbio soft-masked pacbio hi-c rna-seq
The genome sequence of Menetries' Clouded Yellow, Colias thisoa Ménétriès, 1832 (Lepidoptera: Pieridae).

PMID 41716938 · PMC12914173 · Wellcome open research · 2026 · 8 claims · 7 setups

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A chromosome-level, haplotype-resolved genome assembly was generated for Colias thisoa as part of Project Psyche

colias pacbio assembled scaffolded pacbio hi-c k-mer
Haplotype-resolved and near telomere-to-telomere assembly of the autotetraploid potato genome.

PMID 41634861 · PMC12955163 · Genome biology · 2026 · 8 claims · 8 setups

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PHap is a new pipeline that enables haplotype-resolved, near-T2T assembly of autopolyploid genomes using only standard HiFi, ONT-UL, and Hi-C sequencing data

autotetraploid parental huashu4 pacbio hi-c illumina
The genome sequence of the Eastern Pale Clouded Yellow, Colias erate (Esper, 1805) (Lepidoptera: Pieridae).

PMID 41960581 · PMC13058573 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was produced for Colias erate (Eastern Pale Clouded Yellow) as part of Project Psyche.

colias hmw pacbio hi-c
The genome sequence of a hoverfly , Melangyna compositarum (Verrall, 1873) (Diptera: Syrphidae).

PMID 41971599 · PMC13069379 · Wellcome open research · 2026 · 7 claims · 8 setups

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A genome assembly was generated for a single male Melangyna compositarum hoverfly specimen (idMelComo1) as part of the Darwin Tree of Life project.

melangyna barcoding high pacbio
The genome sequence of the Club-Horned Wood Borer Wasp, Trypoxylon clavicerum Lepeletier de Saint Fargeau & Audinet-Serville, 1828 (Hymenoptera: Crabronidae).

PMID 42255363 · PMC13237539 · Wellcome open research · 2026 · 8 claims · 8 setups

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A genome assembly was generated for an individual female Trypoxylon clavicerum (Club-Horned Wood Borer Wasp) as part of the Darwin Tree of Life project

trypoxylon pacbio assembled barcoding high pacbio

Experiments

Standardizing vaginal microbial profiling: evaluating swab materials, storage conditions, and host DNA depletion strategies.

The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet & Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences.

Chemically guided single-cell transcriptomics reveals sulfotransferase-mediated scaffold remodeling in securinine biosynthesis.

A haplotype-resolved genome assembly of the bocaccio rockfish, Sebastes paucispinis.

The genome sequence of the fin whale, Balaenoptera physalus (Linnaeus, 1758) (Artiodactyla: Balaenopteridae).

The genome sequence of the Spanish Fritillary, Euphydryas desfontainii (Godart, 1819) (Lepidoptera: Nymphalidae).

The genome sequence of the Carline Skipper, Pyrgus carlinae (Rambur, 1839) (Lepidoptera: Hesperiidae).

The genome sequence of the Eastern Rock Grayling, Hipparchia syriaca (Staudinger, 1871) (Lepidoptera: Nymphalidae).

The chromosomal genome sequence of the buttercup lucine, Anodontia alba Link, 1807 (Lucinida: Lucinidae) and its associated microbial metagenome sequences.

The genome sequence of Schreibers's Long-fingered Bat, Miniopterus schreibersii (Kuhl, 1817) (Chiroptera: Miniopteridae).

The genome sequence of a muscid fly, Phaonia angelicae (Scopoli, 1763) (Diptera: Muscidae).

Highly contiguous chromosome-level assembly of the rock goby (Gobius paganellus) genome.

The genome sequence of Menetries' Clouded Yellow, Colias thisoa Ménétriès, 1832 (Lepidoptera: Pieridae).

Haplotype-resolved and near telomere-to-telomere assembly of the autotetraploid potato genome.

The genome sequence of the Eastern Pale Clouded Yellow, Colias erate (Esper, 1805) (Lepidoptera: Pieridae).

The genome sequence of a hoverfly , Melangyna compositarum (Verrall, 1873) (Diptera: Syrphidae).

The genome sequence of the Club-Horned Wood Borer Wasp, Trypoxylon clavicerum Lepeletier de Saint Fargeau & Audinet-Serville, 1828 (Hymenoptera: Crabronidae).