Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
-
Full-text index only
Interpretable trajectory inference with single-cell linear adaptive negative-binomial expression (scLANE) testing.
PMID 41533563 · PMC12802912 · Nucleic acids research · 2026 · 8 claims · 3 setups
scLANE models gene expression as a piecewise negative-binomial GLM using truncated power basis (hinge) functions with adaptively chosen knots, yielding directly interpretable multiplicative effect sizes for trajectory differential expression
-
Full-text index only
PreTSA: computationally efficient modeling of temporal and spatial gene expression patterns.
PMID 41673899 · PMC12998178 · Genome biology · 2026 · 7 claims · 8 setups
PreTSA dramatically reduces computational time and memory versus GAM (Monocle, TSCAN) and PseudotimeDE for identifying temporally variable genes (TVGs) while producing highly similar results
-
Full-text index only
pmid-41851619
PMID 41851619 · PMC13169709 · 8 claims · 6 setups
DAESC+ is a dual-module, end-to-end software package (DAESC-P for preprocessing, DAESC-GPU for differential analysis) for single-cell ASE data
-
Full-text index only
BMP and NODAL paracrine signalling regulate the totipotent-like cell state in embryonic stem cells.
PMID 41660012 · PMC12876259 · Frontiers in cell and developmental biology · 2025 · 7 claims · 8 setups
BMP and NODAL (TGF-β) paracrine signalling are key routes of intercellular communication that respectively enhance or diminish the totipotent-like cell (TLC) state in mouse ESCs