Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Nature of protein family signatures: insights from singular value analysis of position-specific scoring matrices.
PMID 18398479 · PMC2276316 · PloS one · 2008 · 8 claims · 6 setups
The first singular component of a PSSM acts to disfavor substitutions, penalizing potentially functionally important residues at conserved sites more severely.
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Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach.
PMID 18304319 · PMC2268676 · BMC evolutionary biology · 2008 · 8 claims · 4 setups
Comparative synteny conservation around a horizontally transferred gene (HTgene) can distinguish single versus multiple independent HGT events even without a robust phylogenetic tree.
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Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different.
PMID 16105176 · PMC1201154 · BMC structural biology · 2005 · 8 claims · 5 setups
Interaction patterns across obligatory and non-obligatory interfaces are different, with obligatory contacts predominantly non-polar
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SNAP: predict effect of non-synonymous polymorphisms on function.
PMID 17526529 · PMC1920242 · Nucleic acids research · 2007 · 7 claims · 8 setups
SNAP, a neural network-based method using sequence-derived information, predicts whether a non-synonymous SNP is neutral or non-neutral for protein function