Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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STARR-CRAAVT: A platform to identify cell type-specific regulatory elements for next-generation gene therapy.
PMID 42006344 · PMC13091475 · iScience · 2026 · 7 claims · 7 setups
STARR-CRAAVT enables high-throughput identification of enhancers in the AAV genome context using capture-based, in silico-tailored candidate libraries
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Has reproduction
Using random walks to identify cancer-associated modules in expression data.
PMID 24128261 · PMC4015830 · BioData mining · 2013 · 8 claims · 8 setups
Walktrap-GM, a random-walk community detection algorithm adapted with stopping criteria (maximum modularity, maximum size, maximum module score), identifies modules significantly enriched with cancer genes in expression-weighted interaction networks.
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Decoding the circRNA-miRNA-mRNA regulatory network in hepatitis B virus-driven hepatocellular carcinoma.
PMID 41845440 · PMC13107627 · Cell communication and signaling : CCS · 2026 · 8 claims · 8 setups
A bioinformatic pipeline combining RNA-seq, circRNA calling, ECDF analysis, PPI, and survival analysis identifies a circRNA-miRNA-mRNA ceRNA network in HBV-integrated HCC cells
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Full-text index only
Spatiotemporal Transcriptomics Characterizes Immune Microenvironment During Mouse Liver Aging.
PMID 42010880 · PMC13096584 · Aging cell · 2026 · 8 claims · 8 setups
T cells are the immune cell population with the most pronounced transcriptomic alterations during liver aging