Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Importance sampling for the infinite sites model.
PMID 18976228 · PMC2832804 · Statistical applications in genetics and molecular biology · 2008 · 7 claims · 2 setups
A new importance sampling proposal distribution for the ISM, derived from a new result on exact sampling from a single segregating site, generally shows greater efficiency than the GT and SD proposals.
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Has reproduction · 83
Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation.
PMID 37652021 · PMC10588993 · Immunity · 2023 · 7 claims · 8 setups
Mural cell-derived chemokines CCL2 and MIF preserve vascular macrophage survival and homeostatic function, generating a protective niche.
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Has reproduction · 68
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
PMID 29420797 · PMC5961211 · Nucleic acids research · 2018 · 7 claims · 3 setups
Octopus-toolkit is a stand-alone application that automatically installs required tools and retrieves/processes public epigenomic and transcriptomic NGS data (ChIP-seq, ATAC-seq, DNase-seq, MeDIP-seq, MNase-seq, RNA-seq) from GEO in a single step.
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A note on generalized Genome Scan Meta-Analysis statistics.
PMID 15717930 · PMC551600 · BMC bioinformatics · 2005 · 7 claims · 3 setups
An Edgeworth series approximation to the null distribution of the weighted GSMA statistic provides a more accurate representation than the normal approximation, especially in the tails