Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Integration of a neuronal RNAseq dataset with the draft Gryllus bimaculatus transcriptome refines gene predictions and highlights potential systematic response to injury.

  PMID 42054377 · PMC13127959 · PloS one · 2026 · 8 claims · 7 setups

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  Integrating prothoracic ganglion RNAseq data with the draft genome refines gene predictions, adding 3,868 novel genes and 9,172 new transcript isoforms (including non-coding transcripts)

  bimaculatus prothoracic differentially gbig rna-seq genome differential

• Highly contiguous chromosome-level assembly of the rock goby (Gobius paganellus) genome.

  PMID 41611730 · PMC12957465 · Scientific data · 2026 · 8 claims · 8 setups

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  Chromosome-level genome assembly of Gobius paganellus spans 813 Mb with >99.9% of sequence anchored to 23 pseudochromosomes

  liver eight pacbio soft-masked pacbio hi-c rna-seq

• Eukan: a fully automated nuclear genome annotation pipeline for less studied and divergent eukaryotes.

  PMID 41567515 · PMC12817076 · NAR genomics and bioinformatics · 2026 · 8 claims · 7 setups

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  Eukan automatically leverages RNA-Seq coverage to inform generalized Hidden Markov Model gene prediction and intron lengths to inform protein sequence alignments

  taxonomically paired-end rna-seq reference automated rna-seq novo