Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.

  PMID 34927097 · PMC8649395 · STAR protocols · 2021 · 5 claims · 7 setups

  Has reproduction · 50

  A protocol combining mechanical and enzymatic dissociation of mouse pancreatic tumor yields a single-cell suspension with preserved cell characteristics suitable for single-cell RNA sequencing.

  kpc pancreatic scrna-seq tumor magnetic cd45+

• Plant Soft Rot Development and Regulation from the Viewpoint of Transcriptomic Profiling.

  PMID 32927917 · PMC7570247 · Plants (Basel, Switzerland) · 2020 · 8 claims · 6 setups

  Has reproduction

  Pba infection of tobacco causes large-scale differential gene expression (8636 DEGs), reflecting profound host physiological reprogramming.

  tobacco potato whole-genome bulk qpcr rna-seq

• Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.

  PMID 29783948 · PMC5963079 · BMC genomics · 2018 · 8 claims · 8 setups

  Has reproduction · 85

  Whole transcriptome sequencing with extensive TSS mapping identified 3078 transcription start sites and 629 ncRNAs in V. cholerae N16961

  cholerae lexa identified directional end rt-pcr

• Spatial organization shapes the turnover of a bacterial transcriptome.

  PMID 27198188 · PMC4874777 · eLife · 2016 · 7 claims · 6 setups

  Has reproduction · 71

  The E. coli transcriptome is spatially organized genome-wide: mRNAs encoding inner-membrane proteins are enriched at the membrane, while mRNAs encoding cytoplasmic, periplasmic and outer-membrane proteins are distributed throughout the cytoplasm.

  coli single-molecule fish time-resolved

• Effect of PAIP1 on the metastatic potential and prognostic significance in oral squamous cell carcinoma.

  PMID 35153296 · PMC8841500 · International journal of oral science · 2022 · 8 claims · 8 setups

  Has reproduction · 10

  PAIP1 mRNA and protein levels are upregulated in OSCC/HNSCC compared to normal tissue.

  hnscc oscc differential copy rna-seq