Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
-
Full-text index only
SeqExpressionAnalyser: An R Package for Automated End-to-End RNA-Seq Analysis From Reads to Differential Expression.
PMID 41602550 · PMC12833196 · Bioinformatics and biology insights · 2026 · 8 claims · 2 setups
SeqExpressionAnalyser is a novel R package/Shiny web application that provides the first R-based, fully integrated interface for interactive end-to-end RNA-Seq differential gene expression analysis, from FASTQ reads to results.
-
Has reproduction · 97
Easy and efficient ensemble gene set testing with EGSEA.
PMID 29333246 · PMC5747338 · F1000Research · 2017 · 8 claims · 2 setups
EGSEA combines results from up to 12 prominent gene set testing algorithms to obtain a consensus ranking of biologically relevant gene sets
-
Has reproduction · 58
Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.
PMID 25273863 · PMC4267930 · G3 (Bethesda, Md.) · 2014 · 8 claims · 6 setups
Revised RNA-seq-based gene models for D. ananassae, D. yakuba, and D. simulans include UTRs, empirically verified intron-exon boundaries, and previously unannotated novel exons, improving on r1.3 comparative-genomics annotations that lack UTRs.
-
Full-text index only
Aging-associated differences in mammary tumor-initiating populations and immune evasion pathways in breast cancer.
PMID 41719331 · PMC12933083 · Proceedings of the National Academy of Sciences of the United States of America · 2026 · 8 claims · 8 setups
Age at NMU exposure critically influences tumor incidence, mutational burden, molecular subtype, and the tumor immune microenvironment