Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 85
Digital sorting of complex tissues for cell type-specific gene expression profiles.
PMID 23497278 · PMC3626856 · BMC bioinformatics · 2013 · 8 claims · 8 setups
The Digital Sorting Algorithm (DSA) deconvolves mixed tissue expression into cell type-specific profiles using only marker genes, without requiring prior knowledge of cell type frequencies or in vitro pure-cell profiles.
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scDIAGRAM: detecting chromatin compartments from individual single-cell Hi-C matrix without imputation or reference features.
PMID 41795655 · PMC12967335 · Briefings in bioinformatics · 2026 · 8 claims · 5 setups
scDIAGRAM infers chromatin A/B compartments directly from an individual scHi-C matrix without imputation or external reference features, then assigns A/B labels using conventional genomic annotations
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Full-text index only
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE).
PMID 15339345 · PMC517707 · BMC bioinformatics · 2004 · 7 claims · 5 setups
A Bayesian mixture model is proposed to account for within-class biological variability in SAGE/Digital-Northern/MPSS tag counting data.
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Has reproduction · 42
CanCellCap: robust cancer cell capture across tissue types on single-cell RNA-seq data by multi-domain learning.
PMID 40739511 · PMC12312500 · BMC biology · 2025 · 8 claims · 7 setups
CanCellCap identifies cancer cells in scRNA-seq data across 13 tissue types, 23 cancer types, and 7 sequencing platforms with 0.977 average accuracy