Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Prior-guided factorization for reliable imputation of scRNA-seq data.

  PMID 41860953 · PMC13004523 · PLoS computational biology · 2026 · 8 claims · 8 setups

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  scZN models scRNA-seq counts as a mixture of a two-state (Gamma-Poisson/negative binomial) transcriptional bursting process and dropout, formalized via a zero-inflated negative binomial (ZINB) and solved as constrained nonnegative matrix factorization into a cell-to-cell-type assignment matrix and a cell-type expression matrix

  ercc real randomly brain scrna-seq cell-cycle k-nn

• Ultra-precision deconvolution of spatial transcriptomics decodes immune heterogeneity and fate-defining programs in tissues.

  PMID 41862467 · PMC13168514 · Nature communications · 2026 · 8 claims · 8 setups

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  UCASpatial is a novel deconvolution algorithm that uses Shannon entropy-based gene weighting combined with weighted non-negative least squares to estimate cell-type composition from spatial transcriptomics data

  simulated colorectal hippocampus ear simulated runtime spatial

• scMILD: Single-cell multiple instance learning for sample classification and associated subpopulation discovery.

  PMID 41907409 · PMC13019583 · iScience · 2026 · 8 claims · 8 setups

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  scMILD identifies condition-associated cells using only sample-level labels via a dual-branch MIL architecture with a shared encoder

  simulated lupus covid-19 ulcerative simulated mixture scrna-seq