Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 86
Assessing Bos taurus introgression in the UOA Bos indicus assembly.
PMID 34922445 · PMC8684283 · Genetics, selection, evolution : GSE · 2021 · 7 claims · 6 setups
Aligning B. taurus samples to UOA_Brahman_1 detects up to 5 million more SNVs than aligning to ARS_UCD1.2, and aligning B. indicus samples to ARS_UCD1.2 detects 1.5 million more SNVs than aligning to UOA_Brahman_1, demonstrating reference-genome bias.
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Full-text index only
HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis.
PMID 34025601 · PMC8134036 · Frontiers in microbiology · 2021 · 8 claims · 8 setups
ABAA reduces the number of false-positives with all metabarcoding methods tested
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Full-text index only
TE-SCALE: a comprehensive database for exploring transposable element expression across human cancers at single-cell resolution.
PMID 41296555 · PMC12807651 · Nucleic acids research · 2026 · 8 claims · 8 setups
TE-SCALE is a comprehensive single-cell database integrating TE expression across 20 human cancer types and 12 tissue origins
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Has reproduction · 49
oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets.
PMID 22973536 · PMC3429929 · G3 (Bethesda, Md.) · 2012 · 8 claims · 6 setups
oPOSSUM-3 is a web-accessible system that identifies over-represented TFBS and TFBS families in DNA sequences of co-expressed genes or in sequences from high-throughput methods such as ChIP-Seq.