Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 50
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.
PMID 36721781 · PMC9884472 · PeerJ · 2023 · 8 claims · 4 setups
Kallisto was the most accurate VCE on simulated data, having the lowest RRMSE, followed by Freyja
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Full-text index only
Integration of bioinformatic tools for the detection of SARS-CoV-2 co-infection cases.
PMID 41609640 · PMC12856159 · Microbial genomics · 2026 · 8 claims · 8 setups
Sample PH-RITM-1395 represents a Delta–Omicron co-infection, confirmed by convergent evidence from Nextclade, bammix, Freyja, VirStrain, AAF analysis and amplicon sorting rather than contamination
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Has reproduction
The indirect effect of mRNA-based COVID-19 vaccination on healthcare workers' unvaccinated household members.
PMID 35246536 · PMC8897446 · Nature communications · 2022 · 8 claims · 6 setups
mRNA-based COVID-19 vaccination is associated with reduced SARS-CoV-2 infections not only in vaccinated healthcare workers but also in their unvaccinated adult household members (indirect effectiveness).
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Full-text index only
Deleterious Effects of SARS-CoV-2 Infection on Human Pancreatic Cells.
PMID 34282405 · PMC8285288 · Frontiers in cellular and infection microbiology · 2021 · 8 claims · 7 setups
iPSC-derived pancreatic endocrine and exocrine (acinar/ductal) cultures express ACE2 and TMPRSS2, enabling SARS-CoV-2 entry