Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• MitoPerturb-Seq identifies gene-specific single-cell responses to mitochondrial DNA depletion and heteroplasmy.

  PMID 41922875 · PMC13095666 · Nature structural & molecular biology · 2026 · 8 claims · 6 setups

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  MitoPerturb-Seq combines pooled CRISPR–Cas9 screening (CROP-seq) with 10x Genomics multiome (scATAC-seq + scRNA-seq) to simultaneously profile mtDNA sequence/copy number/heteroplasmy and the nuclear transcriptome/chromatin accessibility in single heteroplasmic cells

  cas9-expressing heteroplasmic tfam-ko pooled tap-seq hybridization-capture-based

• Human-scATAC-Corpus: a comprehensive database of scATAC-seq data.

  PMID 41296545 · PMC12807747 · Nucleic acids research · 2026 · 8 claims · 6 setups

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  Human-scATAC-Corpus is a comprehensive database of human scATAC-seq data comprising 5,407,621 cells from 35 datasets across 37 tissues or cell lines

  tissues scatac-seq five subset scatac-seq genome unified

• Predicting enhancer-gene links from single-cell multi-omics data by integrating prior Hi-C information.

  PMID 42100854 · PMC13229940 · Nucleic acids research · 2026 · 8 claims · 6 setups

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  SCEG-HiC, a weighted graphical lasso (wglasso) method, predicts enhancer-gene links from single-cell multi-omics data by integrating bulk average Hi-C as a prior penalty matrix

  specified covid-19 scatac scatac-seq bulk