Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: pancreas ✕ Assay: scatac ✕ Clear

Chromatin accessibility landscapes define stromal cell identities across tissues.

PMID 41735542 · PMC13043806 · Communications biology · 2026 · 8 claims · 8 setups

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scATAC-seq profiling across nine mouse tissues reveals both conserved and tissue-specific cis-regulatory elements reflecting dynamic TF-chromatin interplay

lung pancreas heart kidney scatac-seq
Developing a comprehensive database and search tool for single-cell ATAC-seq data.

PMID 41545440 · PMC12816011 · Scientific reports · 2026 · 5 claims · 6 setups

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scATAC.Explorer is a curated database containing 39 publicly available scATAC-seq datasets in a consistent format

hematopoietic drosophila cancer scatac-seq sci-atac-seq sci-car
CellPredX, a computational framework for cross-data type, cross-sample, and cross-protocol cell type annotation through domain adaptation and deep metric learning.

PMID 41481570 · PMC12758788 · PLoS computational biology · 2026 · 8 claims · 7 setups

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CellPredX is a unified semi-supervised framework integrating domain adaptation and deep metric learning to align heterogeneous embeddings for cross-modality cell type annotation.

pbmc fetal pancreas gse149683 matched unmatched cross-protocol
Patient-derived orthotopic xenograft models recapitulate the peritoneal dissemination of pancreatic cancer and delineate its transcriptional and regulatory programs.

PMID 41673768 · PMC12998334 · Journal of experimental & clinical cancer research : CR · 2026 · 6 claims · 8 setups

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Organoids derived from malignant effusions of PDAC patients reproducibly generate peritoneal metastases after orthotopic implantation into the pancreas of immunodeficient mice

pdac organoids frozen pdox orthotopic single-nucleus single-cell

Experiments

Chromatin accessibility landscapes define stromal cell identities across tissues.

Developing a comprehensive database and search tool for single-cell ATAC-seq data.

CellPredX, a computational framework for cross-data type, cross-sample, and cross-protocol cell type annotation through domain adaptation and deep metric learning.

Patient-derived orthotopic xenograft models recapitulate the peritoneal dissemination of pancreatic cancer and delineate its transcriptional and regulatory programs.