Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 1

System / cell line: publicly ✕ Assay: scatac-seq ✕ Clear

scCNMF: an integrated analysis model for paired single-cell RNA sequencing and assay for transposase-accessible chromatin sequencing data leveraging cell similarity and cis-regulatory potential.

PMID 41800139 · PMC12962131 · PeerJ · 2026 · 7 claims · 2 setups

Full-text index only

scCNMF is an NMF-based model for vertical integration of paired scRNA-seq and scATAC-seq data that jointly incorporates a cell similarity matrix and a cis-regulatory potential (CRP) matrix

publicly 10x paired

Experiments

scCNMF: an integrated analysis model for paired single-cell RNA sequencing and assay for transposase-accessible chromatin sequencing data leveraging cell similarity and cis-regulatory potential.