Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Variation resources at UC Santa Cruz.

  PMID 17151077 · PMC1781230 · Nucleic acids research · 2007 · 8 claims · 8 setups

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  The UCSC Genome Browser variation resources integrate polymorphism data from public collections (dbSNP, HapMap, Affymetrix, Perlegen, SeattleSNPs) into a common format with additional annotations and genomic context.

  chimpanzee affymetrix hapmap perlegen snp fixed linkage

• SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.

  PMID 19036790 · PMC2686452 · Nucleic acids research · 2009 · 7 claims · 6 setups

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  SUPERFAMILY provides structural, functional and evolutionary annotation for proteins from all completely sequenced genomes using SCOP-based hidden Markov models

  user-submitted query genomes proteins domain profile-profile comparative

• MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity.

  PMID 19906735 · PMC2808943 · Nucleic acids research · 2010 · 8 claims · 6 setups

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  MBGD allows users to create ortholog groups using a specified subgroup of organisms, distinguishing it from other comparative genomics resources

  complete user-submitted ortholog mbgd hierarchical automated phylogenetic

• The chromosomal genome sequence of the common sea fan, Gorgonia ventalina (Linnaeus, 1758) (Malacalcyonacea: Gorgoniidae).

  PMID 41625986 · PMC12856254 · Wellcome open research · 2026 · 7 claims · 6 setups

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  A chromosome-level genome assembly was produced for Gorgonia ventalina with a total length of 339.18 Mb

  gorgonia cobiont pacbio hi-c rna-seq

• The genome sequence of the Gold Spangle, Autographa bractea (Denis & Schiffermüller), 1775 (Lepidoptera: Noctuidae).

  PMID 41710118 · PMC12910202 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level, haplotype-resolved genome assembly was produced for Autographa bractea (Gold Spangle)

  autographa pacbio hi-c k-mer

• The genome sequence of the Provence Hairstreak, Tomares ballus (Fabricius, 1787) (Lepidoptera: Lycaenidae).

  PMID 41710119 · PMC12910201 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A genome assembly was produced for a male Tomares ballus specimen consisting of two haplotypes (839.94 Mb and 831.10 Mb)

  organism pacbio assembled pacbio hi-c k-mer

• The genome sequence of the Carline Skipper, Pyrgus carlinae (Rambur, 1839) (Lepidoptera: Hesperiidae).

  PMID 41841042 · PMC12989058 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was generated for a female Pyrgus carlinae specimen (ilPyrCarl1) as part of Project Psyche

  pyrgus pacbio hi-c k-mer

• The genome sequence of the Bicolour Sedge, Triaenodes bicolor (Curtis, 1834) (Trichoptera: Leptoceridae).

  PMID 41852352 · PMC12993304 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A genome assembly was generated for a male Triaenodes bicolor specimen, comprising two haplotypes of 615.75 Mb and 613.86 Mb.

  triaenodes pacbio hi-c barcoding

• The genome sequence of the Two-tailed Pasha, Charaxes jasius (Linnaeus, 1767) (Lepidoptera: Nymphalidae).

  PMID 41868653 · PMC13003222 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level, haplotype-resolved genome assembly was produced for Charaxes jasius (Two-tailed Pasha), with haplotype 1 at 465.23 Mb and haplotype 2 at 401.60 Mb.

  charaxes hifi assembled haplotype pacbio hi-c k-mer

• The genome sequence of the Mediterranean Skipper, Gegenes nostrodamus (Fabricius, 1793) (Lepidoptera: Hesperiidae).

  PMID 41908929 · PMC13019046 · Wellcome open research · 2026 · 6 claims · 7 setups

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  A chromosome-level genome assembly was generated for Gegenes nostrodamus (Mediterranean Skipper) as part of Project Psyche.

  gegenes pacbio hi-c k-mer

• The chromosomal genome sequence of the buttercup lucine, Anodontia alba Link, 1807 (Lucinida: Lucinidae) and its associated microbial metagenome sequences.

  PMID 41913758 · PMC13033139 · Wellcome open research · 2026 · 6 claims · 7 setups

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  Genome assembly of Anodontia alba (buttercup lucine) with total length 1,862.85 Mb, 99.28% scaffolded into 18 chromosomal pseudomolecules

  anodontia microbial pacbio hi-c sequencing

• The genome sequence of the Oriental Meadow Brown, Cercyonis lupina (Lepidoptera: Nymphalidae).

  PMID 41924386 · PMC13036442 · Wellcome open research · 2026 · 8 claims · 8 setups

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  Genome of Cercyonis lupina assembled into two haplotypes with total lengths of 508.65 Mb (haplotype 1) and 467.75 Mb (haplotype 2)

  organism pacbio assembled scaffolded pacbio hi-c k-mer

• The genome sequence of the Golden Plusia, Polychrysia moneta (Fabricius, 1787) (Lepidoptera: Noctuidae).

  PMID 41938267 · PMC13047365 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was produced for a male Polychrysia moneta specimen as part of Project Psyche.

  moneta assembled haplotype pacbio hi-c k-mer

• The genome sequence of the Lesser Horseshoe Bat, Rhinolophus hipposideros (Bechstein, 1800) (Chiroptera: Rhinolophidae).

  PMID 42004187 · PMC13090764 · Wellcome open research · 2026 · 8 claims · 6 setups

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  A phased, chromosome-level genome assembly was produced for Rhinolophus hipposideros as part of the Bat1K and Darwin Tree of Life projects.

  rhinolophus pacbio hi-c sequencing

• The genome sequence of the Acorn Weevil, Curculio glandium (T.Marsham, 1802) (Coleoptera: Curculionidae).

  PMID 42021765 · PMC13096787 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosomally complete genome assembly was produced for Curculio glandium (Acorn Weevil) as part of the Darwin Tree of Life project

  curculio assembled alternate pacbio hi-c sequencing

• The genome sequence of the Woodland Grayling, Hipparchia fagi (Scopoli, 1763) (Lepidoptera: Nymphalidae).

  PMID 42078576 · PMC13133624 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level, haplotype-resolved genome assembly was produced for Hipparchia fagi (Woodland Grayling) as part of Project Psyche.

  organism pacbio computational assembled pacbio hi-c k-mer

• The genome sequence of the nematode Ostertagia ostertagi (Stiles, 1892) (Rhabditida, Trichostrongylidae).

  PMID 42094077 · PMC13139848 · Wellcome open research · 2026 · 8 claims · 7 setups

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  A chromosome-level genome assembly was generated for a single male specimen of Ostertagia ostertagi (isolate MOo2).

  single pooled unassembled assembled pacbio hi-c k-mer

• The genome sequence of the Atlantic white-sided dolphin, Leucopleurus acutus (Gray, 1828) (Artiodactyla: Delphinidae).

  PMID 42116831 · PMC13157609 · Wellcome open research · 2026 · 8 claims · 7 setups

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  A chromosomal-level genome assembly was produced for Leucopleurus acutus (Atlantic white-sided dolphin) as part of the Darwin Tree of Life project

  leucopleurus pacbio hi-c rna-seq

• The genome sequence of the Neglected Rustic moth, Xestia castanea (Esper, 1798) (Lepidoptera: Noctuidae).

  PMID 42148443 · PMC13179489 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A genome assembly was generated for a female Xestia castanea individual comprising two haplotypes of 721.78 Mb and 685.53 Mb

  xestia pacbio assembled hi-c barcoding pacbio hi-c

• The genome sequence of the barkfly, Loensia variegata (Latreille, 1799) (Psocodea: Psocidae).

  PMID 42222608 · PMC13219991 · Wellcome open research · 2026 · 8 claims · 6 setups

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  A chromosome-level genome assembly was generated for Loensia variegata (barkfly) as part of the Darwin Tree of Life project

  loensia assembled pacbio hi-c barcoding