Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Integrated reiterative pipeline for rapid epitope-based pan-alphavirus vaccines.
PMID 41811958 · PMC12978219 · Science advances · 2026 · 6 claims · 7 setups
An integrated pipeline combining ML-based epitope prediction (netMHCpan, EpiDope, BepiPred), TCRpMHC structural modeling/docking, and JessEV vaccine design can prioritize viral peptides by immunogenicity, allele coverage, solubility, and stability.
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Robust characterization and interpretation of rare pathogenic cell populations from spatial omics using GARDEN.
PMID 41547856 · PMC12917120 · Nature communications · 2026 · 8 claims · 8 setups
GARDEN identifies and characterizes rare pathogenic cell populations/regions in spatial omics by embedding graph-based dynamic attention into a spatially-aware graph fusion contrastive model
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Colorectal microenvironment determines the prognosis of colorectal cancer.
PMID 41495419 · PMC12868731 · Experimental & molecular medicine · 2026 · 8 claims · 7 setups
The colorectal microenvironment (classified via NBT gene expression as tumor-supportive vs healthy) can serve as a prognostic biomarker predicting cancer invasiveness and recurrence
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Reconstructing single-cell resolution from spatial transcriptomics with CellRefiner.
PMID 41760664 · PMC13066420 · Nature communications · 2026 · 8 claims · 8 setups
CellRefiner is a physical/particle-based model (subcellular element method) that integrates scRNA-seq and spatial transcriptomics data to reconstruct single-cell resolution spatial data