Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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SA2E: spatial-aware auto-encoder for cell type deconvolution of spatial transcriptomics data.
PMID 41863296 · PMC13070677 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 5 setups
SA2E is a spatial-aware auto-encoder framework for cell-type deconvolution that does not require predefined cell-type biomarkers
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PreTSA: computationally efficient modeling of temporal and spatial gene expression patterns.
PMID 41673899 · PMC12998178 · Genome biology · 2026 · 7 claims · 8 setups
PreTSA dramatically reduces computational time and memory versus GAM (Monocle, TSCAN) and PseudotimeDE for identifying temporally variable genes (TVGs) while producing highly similar results
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Delta family protocadherins contribute to protoglomerular targeting of olfactory sensory neuron axons in the olfactory bulb.
PMID 41920906 · PMC13043054 · PLoS genetics · 2026 · 7 claims · 5 setups
Delta1-protocadherins pcdh7b and pcdh11 are most highly expressed in DZ protoglomerulus-targeting OSNs, and knockdown of either impairs axon termination within the DZ protoglomerulus
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Distinct origins and niches determine the cellular responsiveness of CNS macrophages after repopulation.
PMID 41851525 · PMC13132723 · Nature immunology · 2026 · 8 claims · 8 setups
Microglia repopulate rapidly and exclusively cell-autonomously from surviving microglia after CSF-1R inhibitor (BLZ945) depletion.