Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Full-text index only
Deep single-cell decoding of human pancreatic islets reveals T2D β-cell gene expression defects.
PMID 41986506 · PMC13226668 · The EMBO journal · 2026 · 8 claims · 6 setups
Single-cell transcriptome profiling of 245,878 islet cells from 48 donors (ND/PD/T2D) identifies 14 distinct, robust islet cell types detected in every donor
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Protocol to perform cell-type-specific transcriptome-wide association study using scPrediXcan framework.
PMID 41689808 · PMC12925207 · STAR protocols · 2026 · 6 claims · 6 setups
scPrediXcan enables cell-type-specific transcriptome-wide association studies (TWAS) by integrating deep learning-based prediction of gene expression from DNA sequence and epigenetic features.
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Full-text index only
CSsingle: a unified tool for robust decomposition of bulk and spatial transcriptomic data across diverse single-cell references.
PMID 42080261 · PMC13136905 · Nucleic acids research · 2026 · 8 claims · 8 setups
CSsingle explicitly corrects for cell-type-specific RNA content (cell size) differences using ERCC spike-ins or a novel computational estimator
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Has reproduction
D2H2: diabetes data and hypothesis hub.
PMID 38107655 · PMC10723036 · Bioinformatics advances · 2023 · 6 claims · 6 setups
D2H2 is a web-based portal integrating hundreds of curated diabetes-relevant transcriptomics datasets with bioinformatics tools for gene/gene set queries