Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 5

System / cell line: genome ✕ Assay: sds-page ✕ Clear

High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example.

PMID 18597682 · PMC2483986 · BMC genomics · 2008 · 8 claims · 5 setups

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High-accuracy MS proteomics (LTQ-Orbitrap) can be used to verify and improve gene annotation by identifying peptides specific to one of two competing annotation datasets.

tuberculosis sanger spectra lc-ms sds-page signal
An "omics" approach to uropathogenic Escherichia coli vaccinology.

PMID 19758805 · PMC2770165 · Trends in microbiology · 2009 · 8 claims · 8 setups

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An 'omics'-based screening strategy integrating genomic, proteomic, and metabolomic data can identify PASivE UPEC proteins as vaccine candidates

upec vaccination comparative two-dimensional
HUPO Highlights.

PMID 19862759 · PMC4594800 · Proteomics · 2009 · 8 claims · 8 setups

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Mass spectrometry analysis of human liver reference samples (French Reference liver + Huh7 hepatoma cells) achieves substantial human genome coverage via PeptideAtlas processing

liver subcellular models fetal mass antibody-based quantitative
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions.

PMID 33743211 · PMC7951565 · Cell · 2021 · 8 claims · 6 setups

Has reproduction · 84

ChIRP-MS identifies 309 host proteins that bind SARS-CoV-2 RNA during active infection across Huh7.5 and Vero E6 cells.

huh7.5 host lung chirp-ms chirp-rna-seq sds-page
Spontaneous mutations in hlyD and tuf genes result in resistance of Dickeya solani IPO 2222 to phage ϕD5 but cause decreased bacterial fitness and virulence in planta.

PMID 37160956 · PMC10169776 · Scientific reports · 2023 · 7 claims · 8 setups

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Spontaneous ΦD5-resistant D. solani mutants DsR34 and DsR207 show significantly reduced virulence and colonization ability in planta compared to wild-type

potato solani planta maceration genome

Experiments

High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example.

An "omics" approach to uropathogenic Escherichia coli vaccinology.

HUPO Highlights.

Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions.

Spontaneous mutations in hlyD and tuf genes result in resistance of Dickeya solani IPO 2222 to phage ϕD5 but cause decreased bacterial fitness and virulence in planta.