Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Spatial patterns of benthic biofilm diversity among streams draining proglacial floodplains.

  PMID 36003939 · PMC9393633 · Frontiers in microbiology · 2022 · 7 claims · 8 setups

  Has reproduction · 95

  Benthic biofilms in tributaries develop higher biomass than those in glacier-fed streams along the lateral chronosequence

  benthic lyophilized streamwater 16s 18s flow

• Taxonomic and Functional Assessment of Microbial Communities in Urban Runoff-Contaminated Mangrove Sediments.

  PMID 41991668 · PMC13086700 · Current microbiology · 2026 · 7 claims · 7 setups

  Full-text index only

  Colhereiro mangrove shows more pronounced signatures of chronic urban pollution than Araçá Bay, including elevated macronutrients and enrichment of sulfur-metabolizing bacteria and Arcobacter

  mangrove pooled bacterial selected 16s sediment bacterial

• GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring.

  PMID 35087491 · PMC8787282 · Frontiers in microbiology · 2021 · 8 claims · 8 setups

  Has reproduction · 50

  GAL08 is a dominant bacterial clade in Dewar Creek hot spring sediment, comprising up to 29.2% of the microbial community by relative read abundance

  hot 16s gal08 16s qpcr single-cell

• Niche Modification by Sulfate-Reducing Bacteria Drives Microbial Community Assembly in Anoxic Marine Sediments.

  PMID 36988509 · PMC10128000 · mBio · 2023 · 7 claims · 7 setups

  Has reproduction · 100

  SRB modify niches (e.g., pH) to affect species coexistence during organic matter degradation

  coastal marine marinilabiliales srb-inhibited 16s molecular physicochemical

• Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function.

  PMID 35320603 · PMC9323552 · Global change biology · 2022 · 8 claims · 7 setups

  Has reproduction · 39

  Glacier shrinkage (decreasing glacier influence) accelerates downstream organic matter decomposition rates in glacier-fed streams

  benthic sediment subset stream extracellular chlorophyll-a 16s

• The effect of 16S rRNA region choice on bacterial community metabarcoding results.

  PMID 30720800 · PMC6362892 · Scientific data · 2019 · 8 claims · 8 setups

  Has reproduction · 59

  The V2-V3 16S rRNA fragment has higher resolution for lower-rank taxa (genera and species) than V3-V4, enabling more precise distance-based OTU clustering.

  bacterial extracted filtered combined 16s pcr extraction

• Warming Causes a Decline in Baltic Sea Coastal Sediment Microbial Abundance.

  PMID 41712959 · PMC12920023 · Environmental microbiology · 2026 · 6 claims · 5 setups

  Full-text index only

  Contrary to the expected increase in productivity, long-term warming decreased sediment microbial (bacterial and archaeal) cell abundance in the heated bay compared to the control bay

  baltic sediment 16s qpcr propidium 16s

• Aerobic nonylphenol degradation and nitro-nonylphenol formation by microbial cultures from sediments.

  PMID 20043151 · PMC2825322 · Applied microbiology and biotechnology · 2010 · 8 claims · 8 setups

  Full-text index only

  Aerobic biodegradation of branched NP in polluted river sediment occurs within 8 days after a 2-day lag phase at 30°C

  np-polluted sediment-derived fourth-generation extracted biodegradation serial metabolite

• Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats.

  PMID 29590198 · PMC5874073 · PloS one · 2018 · 8 claims · 6 setups

  Has reproduction · 99

  Verrucomicrobia is a highly abundant phylum in north-temperate freshwater lakes, ranking 4th most abundant on average (range 1.7–41.7%)

  bacterial same verrucomicrobia community 16s environmental linear

• Environment and Co-occurring Native Mussel Species, but Not Host Genetics, Impact the Microbiome of a Freshwater Invasive Species (Corbicula fluminea).

  PMID 35444631 · PMC9014210 · Frontiers in microbiology · 2022 · 7 claims · 7 setups

  Has reproduction · 55

  The gut microbiome of C. fluminea is diverse, differs with environmental conditions, and varies spatially among rivers, but is unrelated to host genetic variation

  corbicula six sediment filtered 16s radseq picrust2