Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Vibrio cholerae pathogenic clones.
PMID 16318732 · PMC3367346 · Emerging infectious diseases · 2005 · 8 claims · 1 setups
The US Gulf clone, the Australian clone, and 3 prepandemic El Tor strains are related to the seventh pandemic clone.
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Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer, and founder flush.
PMID 12890320 · PMC3023423 · Emerging infectious diseases · 2003 · 8 claims · 4 setups
Lateral gene transfer (LGT) produced roughly three times as many nucleotide changes as point mutation among the 96 O139 isolates.
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The complete genome sequence of Vibrio cholerae: a tale of two chromosomes and of two lifestyles.
PMID 11178241 · PMC138858 · Genome biology · 2000 · 8 claims · 4 setups
The V. cholerae O1 (El Tor) genome consists of two chromosomes with asymmetrically distributed gene functions
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The post-genomic era for a select few.
PMID 14759254 · PMC395745 · Genome biology · 2004 · 8 claims · 8 setups
The Exofish comparative-genomics tool identifies protein-coding DNA segments by comparing two genome sequences and was used to compare pufferfish (Takifugu, Tetraodon) genomes with mammalian genomes, improving annotation of the human and mouse genomes.
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Has reproduction · 58
HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.
PMID 26945881 · PMC4779561 · BMC genomics · 2016 · 8 claims · 7 setups
HGA leads to significant improvement in assembly quality (N50 and corrected N50) for all 7 evaluated GAGE-B bacterial datasets using most of the 8 evaluated assemblers