Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Chromosome-level genome assembly of the deep-sea solemyid bivalve Acharax haimaensis.

  PMID 41760692 · PMC13066446 · Scientific data · 2026 · 7 claims · 9 setups

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  A. haimaensis genome was assembled to chromosome level (4.27 Gb, scaffold N50 195.52 Mb, anchored to 22 chromosomes) using PacBio HiFi, Illumina, and Hi-C sequencing

  acharax haimaensis illumina pacbio hi-c

• Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus.

  PMID 38909031 · PMC11193758 · Scientific data · 2024 · 7 claims · 8 setups

  Has reproduction · 80

  A chromosome-level genome of P. ornatus was assembled spanning 2.65 Gb with contig N50 of 51.05 Mb, with 99.11% of sequence anchored to 73 chromosomes

  muscle eight genomic genome wgs hi-c rna-seq

• Chromosome-level genome assembly of agar-producing red seaweed Gracilaria vermiculophylla.

  PMID 41629338 · PMC12966425 · Scientific data · 2026 · 8 claims · 8 setups

  Has reproduction · 91

  Assembled the first chromosome-level genome of G. vermiculophylla: 77.5 Mb, 22 pseudochromosomes, contig N50 2.61 Mb, scaffold N50 3.16 Mb

  vermiculophylla assembled predicted genome short-read nanopore hi-c

• Chromosome-level genome assembly of Siberian kale (Brassica napus subsp. pabularia).

  PMID 41760683 · PMC13066399 · Scientific data · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly of Siberian kale variety Beta was generated using PacBio HiFi long reads, Illumina short reads, and Hi-C data

  beta illumina pacbio hi-c

• Transcriptional readthrough precedes alternative splicing programs triggered in CML cells by imatinib.

  PMID 41860998 · PMC13004010 · Science advances · 2026 · 8 claims · 6 setups

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  Imatinib treatment induces transcriptional readthrough in K562 CML cells within 1 hour, before detectable gene expression or alternative splicing changes

  k562 imatinib-resistant long-read short-read rt-qpcr

• A high-quality chromosome-level genome assembly of the endangered species Magnolia amoena.

  PMID 41781393 · PMC13076695 · Scientific data · 2026 · 8 claims · 8 setups

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  Generated a high-quality chromosome-level genome assembly of the endangered/vulnerable species Magnolia amoena using DNBSEQ-T7, PacBio HiFi, and Hi-C data

  amoena pooled short-read pacbio hi-c

• Chromosome-scale genome assembly for yellow wood sorrel, Oxalis stricta.

  PMID 41482730 · PMC12958822 · G3 (Bethesda, Md.) · 2026 · 8 claims · 8 setups

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  O. stricta genome assembly is chromosome-scale, 436 Mb, spanning 12 chromosomes across 2 subgenomes

  stricta long-read short-read hi-c

• The Chromosome-Scale Genome Assembly of the Redlip Blenny, Ophioblennius macclurei (Blenniidae).

  PMID 41378738 · PMC12758960 · Genome biology and evolution · 2026 · 8 claims · 12 setups

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  A chromosome-scale genome assembly of O. macclurei was generated (529.6 Mb, scaffold N50 23.7 Mb, GC 43.49%) using ONT long reads, Illumina short reads, and Hi-C scaffolding.

  blood muscle tissues assembled oxford illumina hi-c

• A high-quality chromosome-level genome assembly of a feather star Glyptometra sp. from a deep seamount.

  PMID 41786724 · PMC13079724 · Scientific data · 2026 · 8 claims · 8 setups

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  This is the first chromosome-level genome assembly of a feather star (Glyptometra sp. CNS01629) from a deep seamount

  genomic arm middle assembled k-mer whole-genome pacbio

• Multi-omics analysis of somatic mutants reveals TCP7 allelically regulates multiple carotenogenic genes in citrus.

  PMID 41664139 · PMC12888363 · Molecular horticulture · 2026 · 7 claims · 7 setups

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  Red-fleshed and orange-fleshed Guanxi pomelo arose from two independent somatic mutation events from the same white-fleshed wild type

  pomelo wild-type rt-qpcr carotenoid genome

• Gap-free telomere-to-telomere haplotype assembly of the tomato hind (Cephalopholis sonnerati).

  PMID 39578472 · PMC11584678 · Scientific data · 2024 · 8 claims · 8 setups

  Has reproduction · 90

  Two T2T gap-free haplotype assemblies of C. sonnerati (YSFRI_Csonn_HA_1.0 and YSFRI_Csonn_HB_1.0) were successfully generated, each spanning 24 chromosomes with no gaps.

  cephalopholis analysis next-generation pacbio ont

• Haplotype-resolved chromosome-level genome assembly of an autohexaploid oil camellia tree Camellia osmantha.

  PMID 41663440 · PMC12996448 · Scientific data · 2026 · 8 claims · 8 setups

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  First haplotype-resolved chromosome-level genome assembly generated for a hexaploid oil camellia (C. osmantha 'Yidan')

  leaves fresh pacbio root pacbio hi-c whole-genome

• A new chromosome-level genome assembly for western painted turtle Chrysemys picta bellii, a model for extreme physiological adaptations.

  PMID 41792601 · PMC13077969 · BMC genomics · 2026 · 6 claims · 8 setups

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  A new haplotype-resolved, chromosome-level reference genome assembly (SLU_Cpb5.0) was generated for C. picta bellii using combined PacBio HiFi, 10x Genomics Chromium, Hi-C, and Bionano optical mapping data from a single individual.

  genomic ultra-high tissues heart 10x pacbio hi-c

• Chromosome-level genome assembly of the striped venus clam Chamelea gallina.

  PMID 41673041 · PMC13004937 · Scientific data · 2026 · 8 claims · 7 setups

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  First chromosome-level genome assembly of Chamelea gallina generated using PacBio HiFi, Illumina, and Hi-C data

  gallina pacbio illumina hi-c