Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 76
Transcriptional landscape of repetitive elements in normal and cancer human cells.
PMID 25012247 · PMC4122776 · BMC genomics · 2014 · 8 claims · 8 setups
RepEnrich, a computational method that uses all mapping reads (uniquely mapping plus multi-mapping reads assigned to repetitive element subfamily assemblies/pseudogenomes), quantifies genome-wide repetitive element enrichment
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Full-text index only
Genomics in space life sciences.
PMID 18558380 · PMC5054090 · Genomics, proteomics & bioinformatics · 2008 · 8 claims · 6 setups
Sudden changes in gravity alter mRNA levels of various genes, indicating molecular-level effects of microgravity
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Full-text index only
VIST: variational inference for single cell time series.
PMID 41535949 · PMC12892444 · Genome biology · 2026 · 8 claims · 6 setups
VIST is a VAE-based method that decomposes single-cell gene expression into time-dependent and time-independent latent components
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Has reproduction · 50
Quality control method for RNA-seq using single nucleotide polymorphism allele frequency.
PMID 25243705 · PMC4231238 · Genes to cells : devoted to molecular & cellular mechanisms · 2014 · 8 claims · 8 setups
SNP allele frequency distributions from RNA-seq reads can detect contaminating cells whose genomic background differs from the target cells; the mode of the distribution reflects the cellular composition while its variance reflects PCR bias.