Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Integrative network modeling reveals mechanisms underlying T cell exhaustion.

  PMID 32024856 · PMC7002445 · Scientific reports · 2020 · 8 claims · 7 setups

  Has reproduction · 59

  TCE arises from changes in diverse gene regulatory interactions across a shared network rather than dysregulation of a single gene

  cd8+ tce manual gene principal

• Interpretable trajectory inference with single-cell linear adaptive negative-binomial expression (scLANE) testing.

  PMID 41533563 · PMC12802912 · Nucleic acids research · 2026 · 8 claims · 3 setups

  Full-text index only

  scLANE models gene expression as a piecewise negative-binomial GLM using truncated power basis (hinge) functions with adaptively chosen knots, yielding directly interpretable multiplicative effect sizes for trajectory differential expression

  zebrafish simulated diverse trajectory simulation