Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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EXPLANA: a user-friendly workflow for EXPLoratory ANAlysis and feature selection in cross-sectional and longitudinal microbiome studies.
PMID 41416890 · PMC12766912 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 3 setups
EXPLANA is a feature selection workflow for longitudinal microbiome studies (LMS) that supports numerical and categorical data and also accommodates cross-sectional studies.
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Has reproduction · 66
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
PMID 36159175 · PMC9492272 · NAR genomics and bioinformatics · 2022 · 8 claims · 6 setups
RiboTaxa, combining BBTools, FastQC, SortMeRNA, MetaRib, EMIRGE, VSEARCH, BBMap and QIIME 2's Sklearn classifier, was built as a pipeline for SSU rRNA-based taxonomic profiling of metagenomics data.
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Has reproduction · 89
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes.
PMID 37032329 · PMC10084625 · Microbiome · 2023 · 8 claims · 7 setups
MAPQ ≥30 filtering improves precision but substantially reduces recall, especially for unrepresented/divergent eukaryotic taxa
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Discovery and characterization of gene-by-environment and epistatic genetic effects in a vertebrate model.
PMID 41672067 · PMC13174225 · Cell genomics · 2026 · 7 claims · 7 setups
A segregation analysis in an F2 medaka cross identified 16 QTLs linked to embryonic heart rate variation across temperatures