Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
-
Full-text index only
Population history and natural selection shape patterns of genetic variation in 132 genes.
PMID 15361935 · PMC515367 · PLoS biology · 2004 · 7 claims · 5 setups
Developed a rigorous computational approach that corrects for multiple hypothesis testing and models population demographic history to test for natural selection
-
Full-text index only
UBD: incorporating uncertainty in cell type proportion estimates from bulk samples to infer cell-type-specific profiles.
PMID 41520227 · PMC12895075 · Briefings in bioinformatics · 2026 · 7 claims · 4 setups
Existing CTS deconvolution methods (e.g., CIBERSORTx, TCA, bMIND, CellDMC, HBI) require cell type proportions that are in practice only estimated, not known, introducing unaccounted uncertainty into CTS inference.
-
Has reproduction · 58
A comparative study of techniques for differential expression analysis on RNA-Seq data.
PMID 25119138 · PMC4132098 · PloS one · 2014 · 8 claims · 8 setups
edgeR performs slightly better than DESeq and Cuffdiff2 in terms of the ability to uncover true positives.
-
Full-text index only
MIRit: an integrative R framework for the identification of impaired miRNA-mRNA regulatory networks in complex diseases.
PMID 41800385 · PMC12961272 · Bioinformatics advances · 2026 · 8 claims · 5 setups
MIRit is a comprehensive, open-source R/Bioconductor framework for integrative miRNA–mRNA analysis that supports both paired and unpaired datasets using statistically appropriate methods.