Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• TFAP2 paralogs facilitate chromatin access for MITF at pigmentation and cell proliferation genes.

  PMID 35580127 · PMC9159589 · PLoS genetics · 2022 · 8 claims · 8 setups

  Has reproduction · 95

  Pigmentation genes are only expressed in mitfa-expressing zebrafish melanocyte-lineage cells that also express tfap2 paralogs

  gfp+ sk-mel-28 tfap2a single-cell crispr atac-seq

• Gli3R-mediated inhibition of hedgehog signaling alters the embryonic transcriptome in zebrafish.

  PMID 41546624 · PMC12958812 · G3 (Bethesda, Md.) · 2026 · 8 claims · 5 setups

  Full-text index only

  Ubiquitous overexpression of zGli3R (Tg(ubb:zGli3R)) causes widespread changes to the 30 hpf zebrafish embryonic transcriptome

  hpf dpf bulk gene bright-field

• Delta family protocadherins contribute to protoglomerular targeting of olfactory sensory neuron axons in the olfactory bulb.

  PMID 41920906 · PMC13043054 · PLoS genetics · 2026 · 7 claims · 5 setups

  Full-text index only

  Delta1-protocadherins pcdh7b and pcdh11 are most highly expressed in DZ protoglomerulus-targeting OSNs, and knockdown of either impairs axon termination within the DZ protoglomerulus

  omp zebrafish single-cell facs gene

• Spns1-dependent endocardial lysosomal function drives valve morphogenesis through Notch1-signaling.

  PMID 39720516 · PMC11667069 · iScience · 2024 · 7 claims · 8 setups

  Has reproduction · 78

  Autophagosomal, autolysosomal, and lysosomal vesicles significantly accumulate in the atrioventricular canal (AVC) and outflow tract (OFT)/bulboventricular regions and their developing valves during zebrafish heart development.

  β-actin2 tgki cmv tgbac light-sheet lysotracker lysosome

• Rtf1-dependent transcriptional pausing regulates cardiogenesis.

  PMID 41537425 · PMC12807453 · eLife · 2026 · 8 claims · 7 setups

  Full-text index only

  Rtf1 activity is essential for differentiation of the myocardial lineage from mesoderm

  zebrafish embryo embryonic mescs crispr situ shrna