Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Single-cell exon deletion profiling reveals splicing events that shape gene expression and cell state dynamics.

  PMID 41633991 · PMC12868714 · Nature communications · 2026 · 8 claims · 5 setups

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  scCHyMErA-Seq enables simultaneous single-cell capture of Cas9 and Cas12a guide RNAs together with polyadenylated transcripts, integrating exon-deletion CRISPR screening with 10x Genomics scRNA-seq

  hap1 nrf1 flow northern droplet-based

• Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor.

  PMID 30576656 · PMC6310685 · Molecular cell · 2018 · 8 claims · 7 setups

  Has reproduction

  Rap1 represses divergent noncoding transcription at highly expressed RP gene promoters (e.g., IRT2 at RPL43B, iMLP1 at RPL40B)

  cerevisiae northern western sequencing

• Viral and host determinants of RNA virus vector replication and expression.

  PMID 15734041 · PMC7115378 · Vaccine · 2005 · 7 claims · 4 setups

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  BMV RNA replication occurs in a virus-induced, membrane-bounded compartment rather than in the open cytoplasm.

  bmv saccharomyces wild-type immunogold genome-wide northern

• Splicing retention and enhancer divergence govern the evolutionary fate of ohnologues following whole-genome duplication in rainbow trout.

  PMID 41832354 · PMC13106644 · Scientific reports · 2026 · 7 claims · 8 setups

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  Most rainbow trout ohnologues are retained through conservation (71.4%) rather than neo/sub-functionalization or specialization

  rainbow swanson atlantic northern rna-seq chip-seq all-by-all

• New center a stroke of gene-ius.

  PMID 11171539 · PMC1242068 · Environmental health perspectives · 2001 · 8 claims · 4 setups

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  Exposure to alkylating agents evokes at least three-fold expression changes in about one-third of the yeast genome (~2,000 genes), far beyond DNA repair genes alone

  yeast genomic microarray northern custom

• Endotoxin-tolerant mice have mutations in Toll-like receptor 4 (Tlr4).

  PMID 9989976 · PMC2192941 · The Journal of experimental medicine · 1999 · 8 claims · 8 setups

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  The Lps locus was fine-mapped to a 0.9-cM interval spanning a 1.7-Mb genomic contig on mouse chromosome 4.

  c3h genomic bac multiple-tissue genetic yac direct

• Decreased expression of the Id3 gene at 1p36.1 in ovarian adenocarcinomas.

  PMID 11161400 · PMC2363740 · British journal of cancer · 2001 · 7 claims · 7 setups

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  Id3 mRNA and protein expression are decreased in ovarian cancer cell lines compared to immortalized HOSE cells

  hose ovarian cdna semi-quantitative northern