Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Deciphering immune and cellular reprogramming during the progression from inflammatory bowel disease to colorectal cancer using multi-omics single-cell and spatial transcriptomics.

  PMID 42001187 · PMC13122952 · Journal of translational medicine · 2026 · 8 claims · 5 setups

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  CEACAM5 is consistently upregulated across Crohn's disease and ulcerative colitis samples and links epithelial activation in IBD to tumorigenic processes in CRC

  intestinal colorectal single-cell serum bulk single-cell spatial

• scMILD: Single-cell multiple instance learning for sample classification and associated subpopulation discovery.

  PMID 41907409 · PMC13019583 · iScience · 2026 · 8 claims · 8 setups

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  scMILD identifies condition-associated cells using only sample-level labels via a dual-branch MIL architecture with a shared encoder

  simulated lupus covid-19 ulcerative simulated mixture scrna-seq

• Multi-omics reveal vitamin D regulation of immune-gut microbiome interactions and tolerogenic pathways in inflammatory bowel disease.

  PMID 41895287 · PMC13130636 · Cell reports. Medicine · 2026 · 8 claims · 7 setups

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  12 weeks of vitamin D treatment decreases disease activity scores and inflammatory markers (fecal calprotectin) and improves quality of life in IBD patients

  stool peripheral iga-bound ibd iga-seq igg-seq blood