Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 86
RNASEQR--a streamlined and accurate RNA-seq sequence analysis program.
PMID 22199257 · PMC3315322 · Nucleic acids research · 2012 · 8 claims · 7 setups
RNASEQR is a new RNA-seq mapper/aligner that combines a BWT-based (Bowtie) transcriptomic/genomic alignment with hash-based BLAT local alignment in three sequential steps: transcriptome mapping, novel exon detection, and anchor-and-align novel splice junction identification.
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Has reproduction · 75
Genomic regions and candidate genes selected during the breeding of rice in Vietnam.
PMID 35899250 · PMC9309459 · Evolutionary applications · 2022 · 8 claims · 7 setups
XP-CLR and FST scans identify genomic regions with distorted allele frequency/differentiation patterns resulting from differential selective pressures between Vietnamese rice subpopulations
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Full-text index only
piRNABank: a web resource on classified and clustered Piwi-interacting RNAs.
PMID 17881367 · PMC2238943 · Nucleic acids research · 2008 · 6 claims · 4 setups
piRNABank is a web-accessible database storing empirically known piRNA sequences and annotations for human, mouse and rat.
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Full-text index only
Correlation of microsynteny conservation and disease gene distribution in mammalian genomes.
PMID 19909546 · PMC2779822 · BMC genomics · 2009 · 7 claims · 8 setups
Density of mouse orthologs of human disease genes correlates with regions of conserved microsynteny in the mouse genome