Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Prenatal and postnatal effects of gestational immune activation on synaptic and neurodevelopmental pathways via epigenetic mechanisms.

  PMID 41654489 · PMC12923905 · Translational psychiatry · 2026 · 7 claims · 6 setups

  Full-text index only

  MIA induces enduring epigenetic reprogramming of gene regulatory networks in the developing brain that persists into adulthood

  sorted frontal rna-seq mia-responsive chip-seq rna-seq facs

• Single-cell transcriptional dynamics of flavivirus infection.

  PMID 29451494 · PMC5826272 · eLife · 2018 · 8 claims · 7 setups

  Has reproduction · 90

  viscRNA-Seq, a modified Smart-seq2 protocol with an added virus-specific capture oligo, enables simultaneous quantification of host mRNA and intracellular viral RNA from the same single cell.

  huh7 viscrna-seq qpcr gene

• Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming.

  PMID 31515287 · PMC6771397 · Genome research · 2019 · 7 claims · 6 setups

  Has reproduction · 75

  XCR during iPSC reprogramming is hierarchical, with distinct subsets of X-linked genes reactivating early, intermediate, late, and very late

  mus mefs bulk independent allele-specific fluorescence-activated live

• PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data.

  PMID 30951143 · PMC6450036 · Database : the journal of biological databases and curation · 2019 · 7 claims · 7 setups

  Has reproduction · 80

  PanglaoDB is a web server providing pre-processed and pre-computed analyses of published mouse and human scRNA-seq experiments through a user-friendly interface.

  randomly single-cell single scrna-seq cell-type orthogonal

• Landscape of microRNA and target expression variation and covariation in single mouse embryonic stem cells.

  PMID 41526192 · PMC12863184 · Genome research · 2026 · 8 claims · 6 setups

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  microRNAs form four distinct coexpression groups across single mESCs

  embryonic small-seq bulk smart-seq2

• ATRX loss couples genome instability at a G-rich repeat to dysregulation of human alpha-globin expression.

  PMID 41688464 · PMC13018553 · Nature communications · 2026 · 8 claims · 8 setups

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  ATRX deficiency downregulates α-globin (HBM/HBA) selectively in a subset of cells that exhibit DNA damage, rather than uniformly across the population

  cd34+ single day hudep-2 crispr-cas9 cfu single-cell