Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Spatially resolved osteoblast-traced transcriptomics uncovers TGF-β as a combination target with sclerostin in osteoporosis.
PMID 41927532 · PMC13046724 · Bone research · 2026 · 8 claims · 8 setups
Spatially resolved osteoblast-traced transcriptomics (lineage tracing + SLACS) identifies TGF-β signaling as a regulator of osteoblast activation state on quiescent bone surfaces
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Spider: a flexible and unified framework for simulating spatial transcriptomics data.
PMID 41237053 · PMC12790819 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 6 setups
Spider simulates ST data without requiring real ST data as a reference
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CSsingle: a unified tool for robust decomposition of bulk and spatial transcriptomic data across diverse single-cell references.
PMID 42080261 · PMC13136905 · Nucleic acids research · 2026 · 8 claims · 8 setups
CSsingle explicitly corrects for cell-type-specific RNA content (cell size) differences using ERCC spike-ins or a novel computational estimator
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SGCRNA: spectral clustering-guided co-expression network analysis without scale-free constraints for multi-omic data.
PMID 41615289 · PMC12856952 · Briefings in bioinformatics · 2026 · 8 claims · 8 setups
WGCNA's reliance on a scale-free topology assumption is problematic because real co-expression networks do not consistently exhibit scale-free properties