Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Spatial transcriptomics unveils immune cellular ecosystems associated with patient survival in diffuse large B-cell lymphoma.
PMID 42010788 · PMC13102037 · Oncoimmunology · 2026 · 7 claims · 7 setups
DLBCL tissues are organized into six recurrent, spatially defined cellular ecosystems (Cell-Eco) with distinct immune compositions, transcriptional programs, and neighborhood architectures.
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Serial Spatial Transcriptomes Reveal Regulatory Transitions in Maize Leaf Development.
PMID 41493197 · PMC13110159 · Plant biotechnology journal · 2026 · 8 claims · 5 setups
An optimised Visium spatial transcriptomics protocol (two-step OCT embedding combined with OCT-Immersion First cryopreservation) preserves high-integrity RNA from fragile plant tissues such as SAM
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Charting spatial ligand-target activity using Renoir.
PMID 42086556 · PMC13144314 · Nature communications · 2026 · 8 claims · 8 setups
Renoir computes a neighborhood activity score for curated ligand-target pairs at each spatial spot/cell by integrating cell type abundance, cell type-specific mRNA abundance, receptor expression, gene entropy, and mutual information between ligand and target genes.
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FineST: contrastive learning integrates histology and spatial transcriptomics for nuclei-resolved ligand-receptor analysis.
PMID 41839892 · PMC13201544 · Nature communications · 2026 · 8 claims · 6 setups
FineST, a bimodal contrastive learning model integrating histology (Virchow2 ViT features) and spatial gene expression, enables nuclei-resolved high-resolution RNA imputation.