Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Proteomic interrogation of androgen action in prostate cancer cells reveals roles of aminoacyl tRNA synthetases.

  PMID 19763266 · PMC2740864 · PloS one · 2009 · 8 claims · 8 setups

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  Androgen treatment alters the whole-cell proteome of LNCaP prostate cancer cells

  lncap androgen prostate itraq mudpit immunoblot

• Optimizing sample handling for urinary proteomics.

  PMID 18662026 · PMC5451898 · Journal of proteome research · 2008 · 7 claims · 4 setups

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  The method of protein extraction (lyophilization, ethanol precipitation, ultrafiltration, reverse-phase trapping column) does not alter the urinary proteome at the protein or peptide level

  urine bradford sds-page

• Quantitative analysis of age specific variation in the abundance of human female parotid salivary proteins.

  PMID 19764810 · PMC2834885 · Journal of proteome research · 2009 · 7 claims · 5 setups

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  Protein expression in human female parotid saliva is age-dependent, with distinct protein sets differentially abundant between young and older healthy women

  pooled hcic trypsin-digested normalized hydrophobic sds-page mudpit

• The use of urine proteomic and metabonomic patterns for the diagnosis of interstitial cystitis and bacterial cystitis.

  PMID 15258332 · PMC3850593 · Disease markers · 2003 · 6 claims · 2 setups

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  Urine MS and 1H-NMR spectral patterns can be used to discriminate IC-affected, BC-affected, and unaffected individuals with approximately 84% success rate.

  urine surface-binding high-resolution

• Salivary proteomics for oral cancer biomarker discovery.

  PMID 18829504 · PMC2877125 · Clinical cancer research : an official journal of the American Association for Cancer Research · 2008 · 8 claims · 5 setups

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  Subtractive salivary proteomics reveals proteins differentially present/expressed between OSCC patients and matched healthy controls.

  pooled saliva shotgun two-dimensional elisa

• Surface-enhanced laser desorption/ionization time-of-flight proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression.

  PMID 18510725 · PMC2481497 · Breast cancer research : BCR · 2008 · 7 claims · 7 setups

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  Unsupervised hierarchical clustering of 130 SELDI-TOF peaks yielded six peak clusters and five distinct groups of breast cancer patients.

  lysates breast microarrays imac-preseparated seldi-tof pilot immunohistochemistry

• Pilot proteomic profile of differentially regulated proteins in right atrial appendage before and after cardiac surgery using cardioplegia and cardiopulmonary bypass.

  PMID 18824761 · PMC2629397 · Circulation · 2008 · 8 claims · 3 setups

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  CP/CPB causes multiple consistent, reproducible changes in the human myocardial (right atrial) protein profile

  right excised 2-dimensional tandem sds-page