Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice.

  PMID 29123534 · PMC5662881 · Frontiers in plant science · 2017 · 8 claims · 8 setups

  Has reproduction · 100

  Molecular techniques such as RT-PCR only allow detection of known viruses, with each test specific to one or a small number of related viruses, so unknown viruses can be missed

  garlic pepper pear grapevine rna-seq srna-seq

• miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles.

  PMID 34637468 · PMC8509996 · PloS one · 2021 · 7 claims · 6 setups

  Has reproduction · 100

  RBPs beyond Drosha/DGCR8/Dicer are involved in regulating miRNA biogenesis and explain its spatio-temporal nature

  tissues computational rbps clip-seq rna-seq srna-seq

• Effector gene silencing coordinated by histone methylation and small RNAs enhances host adaptation in a plant pathogen.

  PMID 41505097 · PMC12781887 · Nucleic acids research · 2026 · 8 claims · 8 setups

  Full-text index only

  CRISPR/Cas9 editing of PsSu(z)12 abolishes H3K27me3 deposition at Avr1b and Avr3a, causing transcriptional reactivation and loss of avirulence

  sojae soybean crispr homology-directed virulence

• Integrative sRNA, DNA Methylation, and Transcriptomics Reveals Dynamic Epigenetic Reprogramming of Meloidogyne javanica-Induced Galls in Arabidopsis.

  PMID 42196344 · PMC13207400 · International journal of molecular sciences · 2026 · 8 claims · 5 setups

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  Enrichment of 24 nt sRNAs (rasiRNAs) is a conserved hallmark of galls across early and late infection stages

  meloidogyne arabidopsis javanica-induced small rasirna chromosomal

• Genome-wide reprogramming of sRNA and lncRNA in the epigenetic regulation following interspecific hybridization in the Brassica species.

  PMID 41668146 · PMC12892563 · Molecular horticulture · 2026 · 6 claims · 5 setups

  Full-text index only

  Regulatory differences in sRNAs between the two F1 hybrids are mainly driven by maternal inheritance, with Hybrid-sh showing more maternal influence and Hybrid-yh showing transgressive regulation

  brassica s70 small strand-specific atac-seq

• DNA polymorphisms and N(6)-methyladenosine RNA methylation influencing microRNA expression and regulatory activity in plants.

  PMID 41792625 · PMC13077827 · BMC plant biology · 2026 · 7 claims · 8 setups

  Full-text index only

  Numerous miRNA precursors and mature miRNAs are differentially expressed between Col-0/NIP and other Arabidopsis accessions/rice varieties with distinct habitat parameters

  arabidopsis rice mirna rna-seq small degradome