Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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AXOLOTL: an accurate method for detecting aberrant gene expression in rare diseases using coexpression constraints.
PMID 42083807 · PMC13198384 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 6 setups
AXOLOTL is a novel ensemble outlier detection method that incorporates coexpression constraints to detect aberrant gene expression events in RNA expression matrices.
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Has reproduction · 93
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay.
PMID 40252222 · PMC12033988 · STAR protocols · 2025 · 8 claims · 5 setups
An AAV9-based in vivo MPRA (AAV-MPRA) workflow, combined with a companion informatics platform, can dissect and quantify enhancer activity in mouse heart.
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The fungal pathogen Rhizoctonia solani AG-8 has 2 nuclear haplotypes that differ in abundance.
PMID 41124349 · PMC12774589 · G3 (Bethesda, Md.) · 2026 · 8 claims · 8 setups
R. solani isolates AG8-1 and AG8-3 each possess 2 distinct nuclear haplotypes, each ~50 Mbp assembled into 16 chromosomes
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GeneExt: a gene model extension tool for enhanced single-cell RNA-seq analysis.
PMID 41769841 · PMC12970594 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 8 setups
Incomplete/inaccurate gene annotations, especially missing or truncated 3' UTRs, cause reads to map to non-genic regions and genes to be under-quantified or missing from scRNA-seq expression matrices in non-model species