Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress Responsive Genes in Rice.

  PMID 34089405 · PMC8179884 · Rice (New York, N.Y.) · 2021 · 8 claims · 7 setups

  Has reproduction · 43

  N22 performed better than IR64 under dual (low N + low water) stress overall, owing to better root architecture, chlorophyll/porphyrin synthesis and oxidative stress management

  root shoot leaf rice bulk root chlorophyll

• Transcriptomic and physiological analysis of atractylodes chinensis in response to drought stress reveals the putative genes related to sesquiterpenoid biosynthesis.

  PMID 38317086 · PMC10845750 · BMC plant biology · 2024 · 8 claims · 6 setups

  Has reproduction · 78

  Drought stress significantly increases MDA, proline, soluble sugar, and crude protein content and antioxidative enzyme (SOD, POD, CAT) activity in A. chinensis seedlings

  chinensis physiological relative bulk

• Oxidative stress protection and growth promotion activity of Pseudomonas mercuritolerans sp. nov., in forage plants under mercury abiotic stress conditions.

  PMID 36560952 · PMC9763275 · Frontiers in microbiology · 2022 · 8 claims · 8 setups

  Has reproduction · 54

  Inoculation with SAICEUPSM^T significantly reduces the oxidative stress enzymatic response (CAT, APX, SOD, GR) in Lupinus albus grown under mercury stress

  lupinus saiceupsm^t greenhouse enzymatic mercury

• RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress.

  PMID 24324815 · PMC3855774 · PloS one · 2013 · 8 claims · 8 setups

  Has reproduction · 38

  A total of 1,530 transcripts were differentially expressed between well-watered and water-deficit stressed field-grown upland cotton root tissues (913 up-regulated, 617 down-regulated).

  gossypium uppermost root reads bulk leaf rt-qpcr

• A tissue-resolved, network-based transcriptomic framework for abiotic stress responses in sorghum.

  PMID 41904985 · PMC13033392 · The Plant journal : for cell and molecular biology · 2026 · 8 claims · 8 setups

  Full-text index only

  Tissue specificity is the dominant determinant of abiotic stress-induced gene reprogramming across drought, heat, and salinity stress in sorghum

  sorghum rna-seq qrt-pcr wgcna

• Prediction of condition-specific regulatory genes using machine learning.

  PMID 32329779 · PMC7293043 · Nucleic acids research · 2020 · 8 claims · 6 setups

  Has reproduction · 85

  ConSReg integrates expression, DAP-seq TF-DNA binding, and ATAC-seq open chromatin data into machine learning models to predict condition-specific regulatory genes

  arabidopsis zea bulk dap-seq atac-seq

• Large-scale multi-omics unveils host-microbiome interactions driving root development and nitrogen acquisition.

  PMID 41634153 · PMC12929062 · Nature plants · 2026 · 8 claims · 8 setups

  Full-text index only

  Multi-omics integration of root transcriptome, rhizosphere 16S microbiome and root/shoot ionome across 175 B. napus accessions at two field sites links host gene expression to microbiome assembly and nutrient traits

  lateral rhizosphere shoot napus sequencing 16s ionomic

• Systematic analysis of CNGCs in cotton and the positive role of GhCNGC32 and GhCNGC35 in salt tolerance.

  PMID 35931984 · PMC9356423 · BMC genomics · 2022 · 8 claims · 8 setups

  Has reproduction

  114 CNGC genes were identified across the genomes of four cotton species (G. arboreum, G. raimondii, G. barbadense, G. hirsutum)

  arboreum cotton hirsutum ghcngc genome-wide phylogenetic gene

• Chromosome-scale genome assembly for yellow wood sorrel, Oxalis stricta.

  PMID 41482730 · PMC12958822 · G3 (Bethesda, Md.) · 2026 · 8 claims · 8 setups

  Full-text index only

  O. stricta genome assembly is chromosome-scale, 436 Mb, spanning 12 chromosomes across 2 subgenomes

  stricta long-read short-read hi-c

• Polyploidy-driven expansion and regulatory diversification of the Kelch repeat F-box gene family in sweetpotato.

  PMID 42050392 · PMC13262408 · BMC genomics · 2026 · 8 claims · 8 setups

  Full-text index only

  KFB family size does not scale linearly with ploidy, reflecting lineage-specific gene retention and loss rather than genome multiplication alone

  proteomes kfb four pairwise blastp physicochemical chromosomal

• Sequencing the regulatory genome.

  PMID 18598374 · PMC2481419 · Genome biology · 2008 · 8 claims · 8 setups

  Full-text index only

  Nuclear-lamina-associated domains (LADs) define chromatin regions with distinct transcriptional characteristics (fewer, lower-expressed genes, low RNA Pol II occupancy, H3K27me3-enriched borders)

  interphase nine beta-globin drosophila nuclear digital chip