Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• multiDEGGs: Single or Multiomic Differential Network Analysis for Biomarker Discovery and Feature Engineering for Predictive Modeling.

  PMID 41993882 · PMC13082464 · Computational and structural biotechnology journal · 2026 · 8 claims · 3 setups

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  multiDEGGs is a CRAN R package enabling differential network analysis in single or multiomic scenarios by identifying differentially expressed gene-gene pairs rather than single differentially expressed genes

  synthetic synovial eight simulated bulk machine

• Mining transcriptomic data to study the origins and evolution of a plant allopolyploid complex.

  PMID 24883252 · PMC4034613 · PeerJ · 2014 · 8 claims · 8 setups

  Has reproduction · 54

  All three allopolyploid species are fixed hybrids combining the genomes of the two putative diploid parents hypothesized on the basis of previous crossing and molecular work.

  pooled perennial allopolyploid snp single-end read homoeologue

• Systematic design of combination therapy by targeting master regulators of coexisting diffuse midline glioma cell states.

  PMID 42020604 · PMC13175895 · Nature genetics · 2026 · 8 claims · 6 setups

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  A generalizable, network-based framework was established to systematically identify combination therapies targeting complementary coexisting tumor cell states

  malignant eight patient-derived dmg single-cell pooled plate-seq