Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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CoMoDis: composite motif discovery in mammalian genomes.
PMID 17130158 · PMC1702496 · Nucleic acids research · 2007 · 7 claims · 4 setups
CoMoDis is a new bioinformatics tool that streamlines computational identification of novel regulatory modules starting from a single seed motif
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Integrative sRNA, DNA Methylation, and Transcriptomics Reveals Dynamic Epigenetic Reprogramming of Meloidogyne javanica-Induced Galls in Arabidopsis.
PMID 42196344 · PMC13207400 · International journal of molecular sciences · 2026 · 8 claims · 5 setups
Enrichment of 24 nt sRNAs (rasiRNAs) is a conserved hallmark of galls across early and late infection stages
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MicroRNA profiling of BRCA1/2 mutation-carrying and non-mutation-carrying high-grade serous carcinomas of ovary.
PMID 19798417 · PMC2749450 · PloS one · 2009 · 7 claims · 7 setups
High grade serous carcinomas with and without BRCA1/2 abnormalities show very similar miRNA expression profiles, with no clear clustering separation by BRCA1/2 status
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CellPolaris: Transfer Learning for Gene Regulatory Network Construction to Guide Cell State Transitions.
PMID 41498638 · PMC12948241 · Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026 · 8 claims · 8 setups
CellPolaris is a unified computational framework performing TF-centered GRN construction, master TF identification, and TF perturbation simulation